1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgttgctattcacaacgagtatttttggaactaaattatgcttgcatcgttgcatgctttctcatattattttactaatagttccttgtatctttggcagGTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCCCCTGTGGTTGTGTGCTGCCTATTTGTGTTATTGTTGATCTGGATGTAGC
species | Oryza sativa |
transcript | LOC_Os02g57080.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGACCATATCATCCTCATTCGCCATCCCCATCTCCCCTTCCACAAG GTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCCEST: gi|58670437|gb|CK059123.1|CK059123
genomic: CAGAAGACCATATCATCCTCATTCGCCATCCCCATCTCCCCTTCCACAAGgtttgttatg ... tctttggcagGTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCC
EST: TCCTCATTCGCCATCCCCATCTCCCCTTCCACAAG GTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCC
genomic: TCCTCATTCGCCATCCCCATCTCCCCTTCCACAAGgtttgttatg ... tctttggcagGTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCC
atcgttgcatgctttctcatattattttactaatagttccttgtatctttggcagGTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCCCCTGTGGTTGTGTGCTGCCTATTTGTGTTATTGTTGATCTGGATGTAGC
tactaat putative branch site (score: 1)
ttccttgtatcttt putative PPT
tttctcatattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgctattcacaacgagtatttttggaactaaattatgcttgcatcgttgcatgctttctcatattattttactaatagttccttgtatctttggcagGTTGTACTGATAACTGCTCTGATCCAATGACTACAACACCGATTGGCTCCCCCTGTGGTTGTGTGCTGCCTATTTGTGTTATTGTTGATCTGGATGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC