1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgaagtcaaccttactatagtaaaaatgcttttagcagttcatgctggtgtggtagatgtaagcatgccttttctttctctaccctgaaacatgagcagTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAG
species | Oryza sativa |
transcript | LOC_Os02g56550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG TTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATAEST: gi|27548820|gb|CA766802.2|CA766802
genomic: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGgtactgtatg ... acatgagcagTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATA
EST: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG TTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATAEST: gi|44668118|gb|CR281552.1|CR281552
genomic: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGgtactgtatg ... acatgagcagTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATA
EST: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTCTGGAG TTGATGGGGTTGATCCTGTTAGGCGEST: gi|33690072|gb|CF318311.1|CF318311
genomic: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGgtactgtatg ... acatgagcagTTGATGGGGTTGATCCTGTTAGGCG
EST: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG TTGATGGGGGTTGATCCTGCTAGGCGAGAGAAGCTTGTTGATCTACTAGAT
genomic: TGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAGgtactgtatg ... acatgagcagTTGATGGGG-TTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGAT
ctggtgtggtagatgtaagcatgccttttctttctctaccctgaaacatgagcagTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAG
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaagtcaaccttactatagtaaaaatgcttttagcagttcatgctggtgtggtagatgtaagcatgccttttctttctctaccctgaaacatgagcagTTGATGGGGTTGATCCTGTTAGGCGAGAGAAGCTTGTTGATCTACTAGATATTGATCTGCAATGGCGCATGCATAAAGTCTCAGATGGACAACGCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - -aatgctt
- - - - - - - - - - - - - - - - - - - -ttcatgc