1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...caatcatcttcataggttgtgcaagctttgtccctgtgtagttagaattaatttatgcattatcaggatttgttcaaatgcgtggttcctcttttaatagGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGA
species | Oryza sativa |
transcript | LOC_Os02g54770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATG GCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGTGGAGEST: gi|117221467|gb|CT859027.1|CT859027
genomic: CGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGgtatgtaacg ... cttttaatagGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAG
EST: CGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATG GCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGTGGAG
genomic: CGATTTTGATGACAAGAGGGATGCTGAGGATGCACTCCGTGATTTAGATGgtatgtaacg ... cttttaatagGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAG
aattaatttatgcattatcaggatttgttcaaatgcgtggttcctcttttaatagGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGA
aattaat putative branch site (score: 3)
ttcctctttt putative PPT
tcttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatcatcttcataggttgtgcaagctttgtccctgtgtagttagaattaatttatgcattatcaggatttgttcaaatgcgtggttcctcttttaatagGCAAGAATGGATGGAGAGTTGAGCTCTCACGGAACTCAAGTAGCCGCGGAGGTCGTGATCGACATGGTGGGTCTGAGATGAAGTGCTATGAGTGTGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - catcttc
- - - - - - - - - -tgcaagc
- - - - - - - - - - - - - - -gtccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - ttatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcgtg