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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccaaccaaccaattcagtctactcatctcatctcgatcgatcaactctcaaaaagcagctgtcgaggaaaccggggtgaatttggtttgtggcatttgaaaagATTCAAGGCGGAGATCTCGAGCAGCATCTCCAAGACGGCGCCGGACTTCAGCACCGTGTACGTCGTCTCCAAAGGCGGCAAGGTGACGTCGGTGCGGCAG

Basic information

species Oryza sativa
transcript LOC_Os02g54590.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g54590.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G301647_T02 (Zea mays), 3'ss of exon 3
------------gtaaccaaccaaccaattca-gtctactcatctcatctcgatcgatcaactctcaaaaagcagct-gtcgaggaaaccggggtgaatttggtttg---tggcatttgaa--aagATTCAAGGCGGAGATCTCGAGCAGCATCTCCAAGACGGCGCCGGACTTCAGCACCGTGTACGTCGTCTCCAAAGGCGGCAAGGTGACGTCGGTGCGGCAG
             | ||  |    ||       | | |  |||       ||||||||| |   ||  |  |   || ||| || |   ||  |  |    ||  ||   |||  | ||||  ||| ||||||||||| ||||  | || |||||||||| | ||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
gtgagtgggcgactgactcaatggccgtcctgtgccgatgcatacgtgtccgatcgatccatcgtcgcaccgttcctcgtcaagcatcgcgacgctatccaggcctggtttggtttgtgaatgaagGTTCAAGGCGGAAATCTGCAACACCATCTCCAAGTCCGCGCCCGACTTCTGCACCGTGTACGTCGTCTCCAAGGGCGGCAAGGTGACGTCGGTGCGGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaaagcagctgtcgaggaaaccggggtgaatttggtttgtggcatttgaaaagATTCAAGGCGGAGATCTCGAGCAGCATCTCCAAGACGGCGCCGGACTTCAGCACCGTGTACGTCGTCTCCAAAGGCGGCAAGGTGACGTCGGTGCGGCAG
                                             atttgaaaa  TA-rich tract