1 5' 3' | 2 5' 3' | 3 5' 3' |
...atttctaatcagaagcaaagttagacagccatgatgagctgcccctatgactatctgggcatctcttctgattattgataaatgttcatgtaaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAATCCAGTCATCAGATAGGAGCAAGATCAAGCATCATGTCAAGATCAGTCA
species | Oryza sativa |
transcript | LOC_Os02g54200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAG GTATCGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAAEST: gi|88967998|gb|CI098240.1|CI098240
genomic: GAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAGgtagcagatg ... taaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAA
EST: CCTAAGCAACAGCTCGAAGGGATTAACAAAG GTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAAEST: gi|88956554|gb|CI092781.1|CI092781
genomic: CCTAAGCAACAGCTCGAAGGGATTAACAAAGgtagcagatg ... taaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAA
EST: GGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAG GTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAAEST: gi|88245722|gb|CI245571.1|CI245571
genomic: GGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAGgtagcagatg ... taaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAA
EST: GAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAG GTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAA
genomic: GAGGTCATTGGAGTGCTGGCCTAAGCAACAGCTCGAAGGGATTAACAAAGgtagcagatg ... taaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAA
tatgactatctgggcatctcttctgattattgataaatgttcatgtaaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAATCCAGTCATCAGATAGGAGCAAGATCAAGCATCATGTCAAGATCAGTCA
tattgat putative branch site (score: 3)
attattgataaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttctaatcagaagcaaagttagacagccatgatgagctgcccctatgactatctgggcatctcttctgattattgataaatgttcatgtaaaatgcagGTATTGTACAGAACATTGTTGAAGAAAAACTCCAACAACTCACCCAGTTAATCCAGTCATCAGATAGGAGCAAGATCAAGCATCATGTCAAGATCAGTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - -cagaagc
- - - - - - - - - - - - - - -catgatg
- - - - - - - - - - - - - - - - - - agctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatg