1 5' 3' | 2 5' 3' | 3 5' 3' |
...ggtccagtacggaatagtgcaactgtaaacagtcgattttagcgatgaacttcctggtttgcatgaatgctgtttatgctcattggttgcttctctgcagATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGT
species | Oryza sativa |
transcript | LOC_Os02g53720.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATAACTGAGTGCAATCTCCATCACTTG ATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACEST: gi|58656929|gb|CK045609.1|CK045609
genomic: GATAA-TGAGTGCAATCTCCATCACTTGgtaactattt ... ttctctgcagATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGAC
EST: GATAATGAGTGCAATCTCCATCACTTG ATCCTATCCAAGAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGA
genomic: GATAATGAGTGCAATCTCCATCACTTGgtaactattt ... ttctctgcagATCCTATCCAA-AGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGA
tgaacttcctggtttgcatgaatgctgtttatgctcattggttgcttctctgcagATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGT
ttgcttctct CT-rich tract
tgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtccagtacggaatagtgcaactgtaaacagtcgattttagcgatgaacttcctggtttgcatgaatgctgtttatgctcattggttgcttctctgcagATCCTATCCAAAGCCGCAGACAACACGGTCATGGAGATGGTCGACCCAGACATCGCCGATACGTGCAAAGATCTTGGCGAGGTCAAGAAGGTGTTCCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG