1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagttctgaaacttctcattcctccaaattatcagcactgaaaaagatcaatatatagatggcatctgaatttctggttgataaattaaaacatgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAG
species | Oryza sativa |
transcript | LOC_Os02g51410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|29687750|gb|CB684025.1|CB684025
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|29661027|gb|CB657302.1|CB657302
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|88333298|gb|CI642335.1|CI642335
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|58599198|gb|CK009726.1|CK009726
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|29660283|gb|CB656558.1|CB656558
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|58674778|gb|CK063465.1|CK063465
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|58587730|gb|CF986038.1|CF986038
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|58603248|gb|CK013776.1|CK013776
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|55409593|gb|CV721969.1|CV721969
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|29660344|gb|CB656619.1|CB656619
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|5004551|gb|AU069726.1|AU069726
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|58612291|gb|CK040003.1|CK040003
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTEST: gi|29636670|gb|CB641679.1|CB641679
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
EST: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTG GAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
genomic: ATCAGAAGAAGTTCTCTTCTATTTGAATGGACGGTGTATTTACCTAGTTGgttagttctg ... atgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTT
tcaatatatagatggcatctgaatttctggttgataaattaaaacatgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAG
ggttgat putative branch site (score: 34)
ttgataaattaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctgaaacttctcattcctccaaattatcagcactgaaaaagatcaatatatagatggcatctgaatttctggttgataaattaaaacatgtctgcagGAATGATGGGTTCTGGAAAAAGTACTGTGGGAAAGATCATGTCTGAAGTTTTGGGTTATTCGTTCTTTGATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG