1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtacatatcactgcttcttaagtcttaatttgtagaggtagtattgctatctaattgacctgacttatacttgtccatattctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATT
species | Oryza sativa |
transcript | LOC_Os02g49980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|33817712|gb|CF334689.1|CF334689
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|88434251|gb|CI589316.1|CI589316
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|88342916|gb|CI640249.1|CI640249
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|88575977|gb|CI670122.1|CI670122
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCCACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|33808162|gb|CF329970.1|CF329970
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|88345402|gb|CI656060.1|CI656060
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|33817714|gb|CF334690.1|CF334690
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|86600191|gb|CI251561.1|CI251561
genomic: ACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATGTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|55442549|gb|CV734564.1|CV734564
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|66923097|gb|CX109945.1|CX109945
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|58665641|gb|CK054327.1|CK054327
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|88347247|gb|CI632532.1|CI632532
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|33818441|gb|CF335055.1|CF335055
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|58586064|gb|CF984372.1|CF984372
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTEST: gi|55414064|gb|CV726440.1|CV726440
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
EST: ACAGGTGGCTACAGCGAAGACATGATTCCAACT GTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
genomic: ACAGGTGGCTACAGCGAAGACATGATTCCAACTgtatgtacat ... ctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTT
ggtagtattgctatctaattgacctgacttatacttgtccatattctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATT
acctgac putative branch site (score: 3)
tatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtacatatcactgcttcttaagtcttaatttgtagaggtagtattgctatctaattgacctgacttatacttgtccatattctgaaaccagGTAGGATTTAATATGCGAAAAGTCACAAAGGGGAATGTTACGATTAAACTTTGGGATCTTGGAGGGCAACGGAGATTCCGGACCATGTGGGAGCGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT