1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatggcaagctagctcagctctgaccacctaattttatatttatttagactgattatatgattaaattgcatgagttttcaaaacaacgaaacactgatatatttgtctttttttcttctttattaattctcaaattatatcttttgaactaattatggattctccttaatctttttttttttttggatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAAT
species | Oryza sativa |
transcript | LOC_Os02g49160.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGA GCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAEST: gi|86833328|gb|CI334923.1|CI334923
genomic: TACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAgtatggcaag ... gatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAA
EST: TACGAAGACCAGGA-GGAGACTGGATGATGGCTGGAGACGTGCCATGGGA GCTGTTCCTGACAAGCCTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAEST: gi|86852903|gb|CI323212.1|CI323212
genomic: TACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAgtatggcaag ... gatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAA
EST: TACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGA GCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAA
genomic: TACGAAGACCAGGAGGGAGACTGGATGATGGCTGGAGACGTGCCATGGGAgtatggcaag ... gatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAA
cttttgaactaattatggattctccttaatctttttttttttttggatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAAT
ttctccttaatctttt CT-rich tract
ttaatctttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggcaagctagctcagctctgaccacctaattttatatttatttagactgattatatgattaaattgcatgagttttcaaaacaacgaaacactgatatatttgtctttttttcttctttattaattctcaaattatatcttttgaactaattatggattctccttaatctttttttttttttggatgaggcagGCTGTTCCTGACAAGCGTGAAGAGATTGAGGATTGCAAGAGCGGATGACAAGTACTGCTATAGCTGTTGAATAATTGGTTAACCAGGATGGTCAATTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG