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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgccaaataaatatgttcattttcttcgtggaacataatatcgctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG

Basic information

species Oryza sativa
transcript LOC_Os02g48340.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793822|gb|CF322799.1|CF322799
EST:     TTCCCGGTTCCGCAATACAG                         CTACACTACATATGGGACAGAATACATCTATCCACAG
genomic: TTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: gi|38474304|gb|CF958436.1|CF958436
EST:     CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCTCAATACAG                         CTACACTACATATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
EST: gi|29677295|gb|CB673570.1|CB673570
EST:     CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAG                         CTACACTACACTATGGGACAGAATACATCTATCCACAG
genomic: CGGACACTTCCTCTTGGGTATTACCAAGGATTCCCGGTTCCGCAATACAGgtatgatgtg ... ccttttgcagCTACACTACA-TATGGGACAGAATACATCTATCCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgttttggaagtcaataaagtgtgttcggtcattcattttcctccttttgcagCTACACTACATATGGGACAGAATACATCTATCCACAG
                               tcattcattttcctcc  CT-rich tract
                                 attcatttt  TA-rich tract