1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tccaaacctcgttgcataattcatgtctttcttattttggtttcaaatttaacatagttaacatttgtttgttaatacaaattactgccattcattacagCTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAGAATTCCGCTTCTGAAATATTTATGGCTCCCCATGTTCTTGCTATGTCCG
species | Oryza sativa |
transcript | LOC_Os02g48100.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCAGCAGCGCTTTGGTGTTGTTCAAAGAGGAAGGTTTAATAGTAAG CTATAT-CCCCTTCCACGAAATCGAGTCGATGATGATACAATCTCAGACGAEST: gi|58683982|gb|CK072669.1|CK072669
genomic: ATGAGCAGCAGCGCTTTGGTGTTGTTCAAAGAGGAAGGTTTAATAGTAAGgtaatttgct ... ttcattacagCTATATACCCCTTCCACGAAATCGAGT-GATGATGATACAATCTCAGACGA
EST: ATGAGCAGCAGCGCTTTGGTGTTGTTCAAAGAGGAAGGTTTAATAGTAAG CTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAG
genomic: ATGAGCAGCAGCGCTTTGGTGTTGTTCAAAGAGGAAGGTTTAATAGTAAGgtaatttgct ... ttcattacagCTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAG
aatttaacatagttaacatttgtttgttaatacaaattactgccattcattacagCTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAGAATTCCGCTTCTGAAATATTTATGGCTCCCCATGTTCTTGCTATGTCCG
tgttaat putative branch site (score: 5)
ttaacatttgtttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccaaacctcgttgcataattcatgtctttcttattttggtttcaaatttaacatagttaacatttgtttgttaatacaaattactgccattcattacagCTATATACCCCTTCCACGAAATCGAGTGATGATGATACAATCTCAGACGAGAATTCCGCTTCTGAAATATTTATGGCTCCCCATGTTCTTGCTATGTCCG
- - - - - -ttgcata
- - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tactgcc