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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttgtccttaaataataattcccagtttgtcactttttagtattgtaaatatatggtcatatgtctttatgttatcttttcttatggcaaacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT

Basic information

species Oryza sativa
transcript LOC_Os02g47860.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G147430_T02 (Zea mays), 3'ss of exon 3
gtagtttgtccttaaataataattcccagtttgtcactttttagtatt---gtaaatatatggtcatatgtctttatgttatcttttcttatg-gcaaacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
|||  || ||    | |  ||  |  || | |  ||   || ||  ||   ||  ||||    ||||   | |  || | ||  ||||||||| |||||||||||||||||||||||||||||  | ||||||||||||||||| || |||||| ||||||| ||||||||  | ||  | ||| | |||||||||||||||
gtaaattatc----actgctatctttcaatattacaagcttaagccttaaggtccatattgcatcattcatttgaatatcataatttcttatgtgcaaacagAACAGTTGATGTCCCTAGCTCCCGAATTGTTATCATTGAAGGTATTTATGCACTGAGTGAGAAGTTACGGCCAGTGATAGACTTGCGTGTTTCTGTCACT

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA17G09080.1 (Glycine max), 3'ss of exon 3
--gtagtttgtcctta-aataataattcccagtttgtcactttttagtattgtaaatatatggtcatatgtctttatgttatcttttcttatggcaaacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
      |   | || | |   |         ||  |   | || | | |    |   |  | ||  | |||   | | || | |  | || || |  |||| || ||||| |||||||||||| | ||||| ||||| ||||||||||||||||| |||||||| | |||| || |  | || || |||||||||||||||
tctcgataccttctcatagcgagggccaagggtgaggagccttctggcagcagagtaagttagttttttgttgatttcttttgtactgttttg-cttacagGACTGTTGAAGTCCCTAGCTCTCGTATTGTAATCATAGAAGGCATCTATGCATTAAGTGAAAAATCACGACCTTTGCTTGATCTTCGTGTTTCTGTCACT

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G07610.1 (Glycine max), 3'ss of exon 4
------gtagtttgtccttaaataataattcccagtttgtcactttttagtattgtaaatatat-ggtcatatgtctttatgttatcttttcttatggcaaacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
          | |  |||   |||  ||   ||     |   | |||| | | ||    ||| |  ||  | |||   | | || | |  | || |  |  |||| || ||||| |||||| ||||| | ||||| ||||| |||||||||||||| || |||||||| |||||| || |  | || || |||||||||||||||
acaatgaccctctcccctagcatagcaagggccga---ggagccttttggcactg-ggctatgttagttttttgttgatttcttttgtactgttttc-cttacagGACTGTTGAAGTCCCTGGCTCTCGTATTGTAATCATAGAAGGCATCTATGCCTTAAGTGAAAAATTACGACCTTTGCTTGATCTTCGTGTTTCTGTCACT

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 3
lower sequence: AT1G26190.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------------------------gtagtttgtcct--taaataataattcccagt---ttgtcactt---tttagtattgtaaatatatggtcata-tgtctttatgtt----------atcttttcttatggcaaa-----------cagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
                                                     ||| ||| ||     ||| ||  | |    ||   |||||||     |||  ||||  |   | ||   |||  | ||| | | ||          ||  ||| | ||| ||              || ||  ||||||||||    ||| ||||||| || |||||||| |||||||| |||||||||||  | ||| || ||||||| || ||||| ||||| |||
gtaatgcgtgacgtgattgtgcagtttccatttactgattcagtcatcattttgtactttatctaaacaaacaaccacttggtgtccattgtcacaaaagtttgatattacattcacatcagcatggtttctgtttattccactgaagcattgtttttaatgccatgatttaatttgctagGACCCTTGATGTCCCACCTTCTCGGATTGTGATTATTGAAGGAATCTATGCTTTGAGTGAAAAACTGCGACCTTTATTGGATCTTCGTGTGTCTGTTACT

upper sequence: LOC_Os02g47860.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv01s0010g01080.t01 (Vitis vinifera), 3'ss of exon 2
gtagtttgtccttaaataataattcccagt--ttgtcactttttagtattgtaaatatatggtcat-atgtctttatgttatcttttcttatggca--aacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
    ||| | |  ||| |  || |   | |   | ||| |   |   | |  |   || ||  | | ||   || |   | | | | ||| |      ||||| ||| |||| ||||| |||||  | ||||| |||||||| || ||| |||| |||||||||||| | ||| || |||||||||| || || ||||| || 
--ttttttttcccaaaaagaaactaatattgactttcagtgcctgtcact-catccatttgcacctgatagtttcaaaatttttatgcttgtaatggtaacagGACACTTGAAGTCCCAAGCTCCCGTATTGTGATCATTGAGGGTATCCATGCTTTGAGTGAAAAGATGCGACCTTTATTGGACCTCCGGGTATCTGTAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgtaaatatatggtcatatgtctttatgttatcttttcttatggcaaacagAACAGTTGATGTCCCTAGCTCTAGGATTGTTATCATTGAAGGCATCTATGCATTGAGTGAAAAGTTACGATCTGTATTGGACCTACGTGTTTCTGTCACT
                                ttatcttttcttat  CT-rich tract
                          tttatgttatctttt  TA-rich tract