1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgttcttttatcaagttatgaagataattttacatctgcttgcttcatgtctttagtgtgcatatacgtattctacctactaattgtgaacttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAAGACATTGCTTACAGCCACTGGAGAAACTATCAGCTATAAGAATCTTAT
species | Oryza sativa |
transcript | LOC_Os02g47800.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTACAAAGAAAATG GTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCGGATGTAAGGATGAEST: gi|29614323|gb|CB619336.1|CB619336
genomic: GGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATG GTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAEST: gi|84117206|gb|CD150973.1|CD150973
genomic: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: GTACAAAGAAAATG GTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAEST: gi|88308819|gb|CI654102.1|CI654102
genomic: GTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATG GTATTGAACTTGTNCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAEST: gi|88728399|gb|CI751909.1|CI751909
genomic: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATG GTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAEST: gi|88332093|gb|CI643510.1|CI643510
genomic: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATG GTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAEST: gi|29638189|gb|CB643198.1|CB643198
genomic: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
EST: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATG GTATTGAACTTGTTCTCGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
genomic: CGTTGGTGCCAATGATGAATTACTGACGGCAAAATGGTACAAAGAAAATGgtaggttttt ... acttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGA
tcatgtctttagtgtgcatatacgtattctacctactaattgtgaacttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAAGACATTGCTTACAGCCACTGGAGAAACTATCAGCTATAAGAATCTTAT
tactaat putative branch site (score: 40)
tactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgttcttttatcaagttatgaagataattttacatctgcttgcttcatgtctttagtgtgcatatacgtattctacctactaattgtgaacttgactagGTATTGAACTTGTTCTTGGAACAAAAGTGATAACCGCTGATGTAAGGATGAAGACATTGCTTACAGCCACTGGAGAAACTATCAGCTATAAGAATCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
-tgttctt
- - - - - - - - - - gaagataa
- - - - - - - - - - - - - - - - - - -tgcttgc
- - - - - - - - - - - - - - - - - - - - - - ttcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcata