1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgatcgtgcagaccactttcttgtagtatgcctggtctttagctggattgtggggtattgctaagttctatgctatgaaactgcatgatttttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAACTGGTCTAATTAAG
species | Oryza sativa |
transcript | LOC_Os02g47600.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGC GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAEST: gi|163929548|gb|EG709315.1|EG709315
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGT GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAEST: gi|58689221|gb|CK077908.1|CK077908
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGC GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAEST: gi|88338355|gb|CI655544.1|CI655544
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGT GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAEST: gi|27576275|gb|CA998969.1|CA998969
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGT GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAEST: gi|58688425|gb|CK077112.1|CK077112
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
EST: GTCCAGGAGCTCCAGCAGTTTTCAACTGC GTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
genomic: GTCCAGGAGCTCCAGCAGTTTTCAACTGTgtaagtttac ... tttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCA
gattgtggggtattgctaagttctatgctatgaaactgcatgatttttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAACTGGTCTAATTAAG
tttttttgtc CT-rich tract
atgattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatcgtgcagaccactttcttgtagtatgcctggtctttagctggattgtggggtattgctaagttctatgctatgaaactgcatgatttttttgtcagGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAACTGGTCTAATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - cgtgcag
- - - - - - - - tttcttg
- - - - - - - - - - - - - -atgcctg
- - - - - - - - - - - - - - - - - - - - -gctggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatga