1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttagtgacatggtttatcttaaaactaaaggtattcatgtgcagagttgactgggttatcttctaatatctttgagaattttggtcactatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAG
species | Oryza sativa |
transcript | LOC_Os02g47440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAAGGGAGATGGCATATAAGCCAGTTGTTCCCCAGACATCTCAGCCAAA CTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAEST: gi|29646264|gb|CB651271.1|CB651271
genomic: CAAAGGGAGATGGCATATAAGCCAGTTGTTCCCCAGACATCTCAGCCAAAgtaatgcttg ... tatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACA
EST: CAAAGGGAGATGGCATATAAGCCAGTTGTTCCCCAGACATCTCAGCCAAA CTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAEST: gi|25806896|gb|CA762857.1|CA762857
genomic: CAAAGGGAGATGGCATATAAGCCAGTTGTTCCCCAGACATCTCAGCCAAAgtaatgcttg ... tatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACA
EST: ATCTCAGCCAAA CTATATTACAGGTGGTATAGAAGCCTGGGATTCCGGTAAAATTCCTGAACA
genomic: ATCTCAGCCAAAgtaatgcttg ... tatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACA
gagttgactgggttatcttctaatatctttgagaattttggtcactatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAG
ttctaat putative branch site (score: 13)
ttatcttctaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagtgacatggtttatcttaaaactaaaggtattcatgtgcagagttgactgggttatcttctaatatctttgagaattttggtcactatgatgtagCTATACTACAGGTGGTATAGAAGCCAGGGATTCTGGTAAAATTCCTGAACAGCATGCGCTACTCGCAGAATCAAAGAG
- - - tgacatg
- - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - -tgactgg