1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actcatcttgagaggagtctgtattggatgttactgaatagtttttggatcttttcactctctttttttagctaagagttcttacctgagtcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTGTGACCTGGTGCCATAGGAACCTCGAGCCATCCGAAGAGTCCCTGAAAC
species | Oryza sativa |
transcript | LOC_Os02g47310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGTCTGGTCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAG TTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTEST: gi|86502638|gb|CI145271.1|CI145271
genomic: ATCTTGTCTGGTCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
EST: GACAAACGGCAG TTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTEST: gi|29643990|gb|CB648997.1|CB648997
genomic: GACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
EST: ATCTTGTCTGGCCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAG TTTGTAAGCGAGCTGGCACGCCTCCCAGCTCCTGGGGCGAGAATAATCATTEST: gi|29675076|gb|CB671351.1|CB671351
genomic: ATCTTGTCTGGTCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
EST: ATCTTGTCTGGTCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAG TTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTEST: gi|86594355|gb|CI251227.1|CI251227
genomic: ATCTTGTCTGGTCCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
EST: CCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAG TTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTEST: gi|38469736|gb|CF953867.1|CF953867
genomic: CCATGGAGAGTGGCGAGCACATGCCAGACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
EST: TGCCAGACAAACGGCAG TTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
genomic: TGCCAGACAAACGGCAGgtaagatact ... tcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATT
tggatcttttcactctctttttttagctaagagttcttacctgagtcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTGTGACCTGGTGCCATAGGAACCTCGAGCCATCCGAAGAGTCCCTGAAAC
ttcttac putative branch site (score: 20)
tcttttac putative PPT
tcttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actcatcttgagaggagtctgtattggatgttactgaatagtttttggatcttttcactctctttttttagctaagagttcttacctgagtcttttacagTTTGTAAGCGAGCTGGCACGCGTCGCAGCTCCTGGGGCGAGAATAATCATTGTGACCTGGTGCCATAGGAACCTCGAGCCATCCGAAGAGTCCCTGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - -ttggatg
- - - - - - - - - - - - - - - ttactga