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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgactacttgatctccccccaattacttcgtgcgtgtttatgtctgtatcctgcaatgtctgaagatttcttactgaaaacgtcatctggtctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACTGGCCTTGTTGCTGTCTTGCTCTGCGATTTTCTGCCTGCTCGCGCCCACC

Basic information

species Oryza sativa
transcript LOC_Os02g47280.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87024725|gb|CI259440.1|CI259440
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86432626|gb|CI086237.1|CI086237
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|87006931|gb|CI275239.1|CI275239
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86486829|gb|CI129462.1|CI129462
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86425718|gb|CI070815.1|CI070815
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86497028|gb|CI139661.1|CI139661
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|88221952|gb|CI221908.1|CI221908
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|89192110|gb|CI393467.1|CI393467
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|88961755|gb|CI096937.1|CI096937
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|89167944|gb|CI109148.1|CI109148
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|89193263|gb|CI050561.1|CI050561
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|89187421|gb|CI047488.1|CI047488
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86260208|gb|CI066081.1|CI066081
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86496618|gb|CI139251.1|CI139251
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|86502015|gb|CI144648.1|CI144648
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|87021596|gb|CI275995.1|CI275995
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGCCTGAATGCTGCCGTGGATGATGATCCTGCTGCCCAGTGAACTCATAC
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGC-GTGGATGATGATCCTGCTGCCCAGTGAACTCATAC
EST: gi|88506069|gb|CI433575.1|CI433575
EST:     ACCAAGGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGGATGCTGCGTGGATGATGATCCTGGTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
EST: gi|66917079|gb|CX103927.1|CX103927
EST:     ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATG                         GTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT
genomic: ACCAATGGCATCCTCTGACTTCTCGGCGGCCAGTTCTCGATCAACTAATGgtacgactac ... ctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcctgcaatgtctgaagatttcttactgaaaacgtcatctggtctgtgtgcagGTGACTGAATGCTGCGTGGATGATGATCCTGCTGCCCAGTGAACTCATACTGGCCTTGTTGCTGTCTTGCTCTGCGATTTTCTGCCTGCTCGCGCCCACC
                     ttcttac  putative branch site (score: 2)
                   atttctta  TA-rich tract