1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtgcgtgtgaattcctaagtttgctgtgggctttgtgtacggcttgtgatgactggattgttcttttgcttgtgatgtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATTATCACTGAAGAAATCTTACGGCGGCTTGTGTCCTGCTCAGCTCTGCAG
species | Oryza sativa |
transcript | LOC_Os02g47200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCCTGCCCCGCTCGAEST: gi|87033195|gb|CI187819.1|CI187819
genomic: CCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATAT-CCCTGCCCCGCTCGA
EST: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATEST: gi|87021714|gb|CI276113.1|CI276113
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
EST: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATEST: gi|88200569|gb|CI200419.1|CI200419
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
EST: TCGTCCGCACCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATEST: gi|86492517|gb|CI135150.1|CI135150
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
EST: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GAAGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATEST: gi|88524397|gb|CI452306.1|CI452306
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
EST: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATEST: gi|218487014|gb|FG958885.1|FG958885
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
EST: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCG GATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
genomic: TCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGgtacgtgcgt ... gtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGAT
tttgtgtacggcttgtgatgactggattgttcttttgcttgtgatgtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATTATCACTGAAGAAATCTTACGGCGGCTTGTGTCCTGCTCAGCTCTGCAG
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcgtgtgaattcctaagtttgctgtgggctttgtgtacggcttgtgatgactggattgttcttttgcttgtgatgtgcatgcagGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATTATCACTGAAGAAATCTTACGGCGGCTTGTGTCCTGCTCAGCTCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG