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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtacattgttcggtatcctataatatttcgtgtcctaattcttgcttgatcagtacatgaatcagattgttctttctctgcagCTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGGAACAACAACATCCTGACCACTGGCGGTATGGACGGCAACATCGTGAACA

Basic information

species Oryza sativa
transcript LOC_Os02g47180.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47180.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv16s0039g02510.t01 (Vitis vinifera), 3'ss of exon 3
gttagtacattgttcggtatcctataatatttcgtgtcctaattcttgcttgatcagtacatgaatcag-attgttctttc---tctgcagCTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGGAACAACAACATCCTGACCACTGGCGGTATGGACGGCAACATCGTGAACA
    |||  | | |   | |  | | |   ||  ||  ||  |  ||  ||||| | | | | |   ||   |||||| ||   | ||||||| || |||||||||||||  ||| ||||  |||||||||| || || ||||||||| ||||||| || ||||| || | ||| || || ||| | ||||
----gtatgtaggtttttgttgtttgaacctt--tggactggtcttttgttgatgatttcttaatagagtgatgttctatcaattatgcagCTGAGGACTCTGAGAGGTGGCCACCAATCTCGAGTCGGTTCTCTAGCTTGGAACAACCACATCCTTACAACTGGAGGAAGGGATGGTAAGATCATTAACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33793484|gb|CF322625.1|CF322625
EST:     GCCTCAACTCTTCCGACATCCAGCTCTGGGACACCAGCTCCAACCGACTG                         CTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGG
genomic: GCCTCAACTCTTCCGACATCCAGCTCTGGGACACCAGCTCCAACCGACTGgttagtacat ... ttctctgcagCTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGG
EST: gi|163920674|gb|EG710007.1|EG710007
EST:     GCCTCAACTCTTCCGACATCCAGCTCTGGGACACCAGCTCCAACCGACTG                         CTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGG
genomic: GCCTCAACTCTTCCGACATCCAGCTCTGGGACACCAGCTCCAACCGACTGgttagtacat ... ttctctgcagCTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgtcctaattcttgcttgatcagtacatgaatcagattgttctttctctgcagCTTAGAACTCTGAGAGGTGTGCACGAATCAAGAGTCGGTTCACTCGCATGGAACAACAACATCCTGACCACTGGCGGTATGGACGGCAACATCGTGAACA
                                      ttgttctttctctgc  CT-rich tract
       taattctt  TA-rich tract