1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggtcgatcggcccaaggcacatcgcggtcgcgttgcgcgtacgcccaggagatgtggatcacgcggctgactcgttcgcgtcacggtgttttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTCGGGTGCGGCACGGAGCACGTGCCCTGCGAGCCGCACTCCGGCGCGGAGC
species | Oryza sativa |
transcript | LOC_Os02g46460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTCEST: gi|87005457|gb|CI285679.1|CI285679
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
EST: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTCEST: gi|29638526|gb|CB643535.1|CB643535
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
EST: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTT GGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
genomic: ACTGGGGCCGCTACAAGACCTGCGCCATATTCCAGGCCATCTTTGTCCTTgtaagcacca ... ttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTC
caggagatgtggatcacgcggctgactcgttcgcgtcacggtgttttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTCGGGTGCGGCACGGAGCACGTGCCCTGCGAGCCGCACTCCGGCGCGGAGC
ggctgac putative branch site (score: 1)
ttttgcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcgatcggcccaaggcacatcgcggtcgcgttgcgcgtacgcccaggagatgtggatcacgcggctgactcgttcgcgtcacggtgttttgcctgcagGGCCTCGCGCTGCTGTCCCTGTCGTCGCGGCTGTACCTGATCAGGCCGGTCGGGTGCGGCACGGAGCACGTGCCCTGCGAGCCGCACTCCGGCGCGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - gcacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtggatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggctg