1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttttctttccattcgattgcacatacgtcgttccataagatgagaatgatgttctattcactttacaaatagtaatgacagaaggcataatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTT
species | Oryza sativa |
transcript | LOC_Os02g45480.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGGACAAAACAATTAGA GTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAEST: gi|163918637|gb|EG710319.1|EG710319
genomic: CAATGGACAAAACAATTAGAgtaaggagaa ... aatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACA
EST: TAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGA GTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAEST: gi|33794977|gb|CF323368.1|CF323368
genomic: TAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaaggagaa ... aatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACA
EST: TAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGA GTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACA
genomic: TAGTAGGAGCCATGAGGCTTTACTCTGCTTCAATGGACAAAACAATTAGAgtaaggagaa ... aatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACA
gaatgatgttctattcactttacaaatagtaatgacagaaggcataatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTT
tttacaaatagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttctttccattcgattgcacatacgtcgttccataagatgagaatgatgttctattcactttacaaatagtaatgacagaaggcataatatttcagGTGTGGGATTTGGCAACACTGCAGTGCATACAGACTCTTTCTGATCATACAGGTGTTGTTATGTCTGTATTGTGTTGGGATCAATTCCTATTATCATGTT
- - - - -tccattc
- - - - - - - - - - -cacatac
- - - - - - - - - - - - - - - - - - - - - - - aatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata