1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtatatatacttctacatccagcaccatctcacatggttcatatttaaggagtgtatatatgctattgatattacttgttgaatttgaagttccaaatcagctcattactaatggttctcttgctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTGGGATAATGGTTTTCGGTGGATTTCTTGCACCAATT
species | Oryza sativa |
transcript | LOC_Os02g43500.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|218495170|gb|FG957512.1|FG957512
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|29684684|gb|CB680959.1|CB680959
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|218483643|gb|FG955539.1|FG955539
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|218491083|gb|FG953112.1|FG953112
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|29667086|gb|CB663361.1|CB663361
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTEST: gi|13422398|gb|AU176457.1|AU176457
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCT
EST: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTG AGTGCAGCTAATCTCAAAATCTACTATGCTACGT
genomic: AAGGGGAACTTCCTGATTTTCCATCATTCATTCCATTCTTGCCTCCCCTGgtaagtatat ... ctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGT
ttgaatttgaagttccaaatcagctcattactaatggttctcttgctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTGGGATAATGGTTTTCGGTGGATTTCTTGCACCAATT
tactaat putative branch site (score: 43)
ttctcttgcttt putative PPT
attactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatatacttctacatccagcaccatctcacatggttcatatttaaggagtgtatatatgctattgatattacttgttgaatttgaagttccaaatcagctcattactaatggttctcttgctttaaacagAGTGCAGCTAATCTCAAAATCTACTATGCTACGTGTTTCACTTTGATTGCTGGGATAATGGTTTTCGGTGGATTTCTTGCACCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA