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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaatacatagttatatgcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG

Basic information

species Oryza sativa
transcript LOC_Os02g42320.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G850355_T02 (Zea mays), 3'ss of exon 4
gtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaa-tacatagttatatgcaaa---ttcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
||| || || | | | | ||     ||||||  |  | ||      ||| |||| ||   |    ||| | | | | |||  ||||  | |||  |  ||| |||   |||||||||||||||||||| || | || || || |||||||||||||| ||
gtatgtgtacc-taagtttt-----tgaatt--ttctcta------tgccacattcttacc----tttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G850355_T03 (Zea mays), 3'ss of exon 3
gtaagtctaacatcactcttaatgc-tgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaa-tacatagttatatgcaaa---ttcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
          ||||  | |   | | | | ||  |   ||       ||| |||| ||  ||    ||| | | | | |||  ||||  | |||  |  ||| |||   |||||||||||||||||||| || | || || || |||||||||||||| ||
----------catctgtatgtgtacctaagtttttgaattttctctatgccacattcttatc----tttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G824831_T03 (Zea mays), 3'ss of exon 4
gtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaa-tacatagttatatgcaaa----ttcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
||| || || | | | | ||     |||||| |||||||        || |||| ||   |    ||| |   | |  ||  ||||  | |||  |  ||| |||    |||||||||||||||||||| || | || || || |||||||||||||| ||
gtatgtgtatc-taagtttt-----tgaatttctctttt--------gccacattctgacc----tttctccatgacgagtgctaaacagatacctgcatgaaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCTAATATTGGAGTTGTCTATAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G850355_T08 (Zea mays), 3'ss of exon 3
gtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaa-tacatagttatatgcaaa---ttcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
||| || || | | | | ||     ||||||  |  | ||      ||| |||| ||  ||    ||| | | | | |||  ||||  | |||  |  ||| |||   |||||||||||||||||||| || | || || || |||||||||||||| ||
gtatgtgtacc-taagtttt-----tgaatt--ttctcta------tgccacattcttatc----tttctctatgataagtgctaaacagatacctgcatgaaaacttttcagGTGCAAAAGATTCAGGCACTAACACCAAATATTGGAGTTGTCTATAG

upper sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S2_595V6.1 (Physcomitrella patens), 3'ss of exon 3
-----------------------------------------------------------------gtaagtctaacatcact-cttaat----gctgaattcctctttta--gtgagttgcgacat---gctattcgttgtttgtttctcagaagcactaatacatagttata--------tgcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
                                                                 | | |  |  ||    | ||| ||      ||| ||| |   |||   | || | |  | |     |||| | |      |  ||| |      ||||  |  | ||         |  |   |||| |  | || |||||||||||||| || ||||| ||||||||||||||
gtgagttatctttcgcaagtttttattttatgcgaaactagggttttgtatgctgctgaacttccgcacggttgccacggtttcttgatcgccagtgatttcttgcattaccataaggtacagcttcgaaatatttgcttcagcgtattcaaatttgtgaatagttgctgatgatatcctctttattctcagATTAATAAAATTCAGTCATTGACCCCAAACATCGGAGTTGTCTACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88344734|gb|CI624385.1|CI624385
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|58594931|gb|CF993239.1|CF993239
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88394630|gb|CI605971.1|CI605971
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAAAATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88695235|gb|CI739273.1|CI739273
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
EST: gi|87011125|gb|CI287802.1|CI287802
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|87011186|gb|CI287863.1|CI287863
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAG
EST: gi|58599900|gb|CK010428.1|CK010428
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|33658810|gb|CF281423.1|CF281423
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAA-ATTGGAGTTGTCTACAGT
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGT
EST: gi|428178|gb|D24326.1|D24326
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGNGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|86848618|gb|CI293933.1|CI293933
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88299773|gb|CI577275.1|CI577275
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88305149|gb|CI652087.1|CI652087
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|58590935|gb|CF989243.1|CF989243
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88759914|gb|CI769470.1|CI769470
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGAC
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGAC
EST: gi|88309484|gb|CI655852.1|CI655852
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88412151|gb|CI573427.1|CI573427
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|33680962|gb|CF309201.1|CF309201
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAAC-TTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88444698|gb|CI694934.1|CI694934
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88826745|gb|CI777310.1|CI777310
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTG
EST: gi|88397120|gb|CI593332.1|CI593332
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88741359|gb|CI764867.1|CI764867
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
EST: gi|88590186|gb|CI709019.1|CI709019
EST:     TATCGCCCACTGAGAAGAAATTGCCTTCTATTTCAGTCGATGAAACATCT                         GTGCAAAAGATTCA
genomic: TATCGCC-ACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCA
EST: gi|55413225|gb|CV725601.1|CV725601
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88421484|gb|CI618608.1|CI618608
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|86848709|gb|CI293996.1|CI293996
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88577098|gb|CI673653.1|CI673653
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88578215|gb|CI687134.1|CI687134
EST:     TTATCGCCCCTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|95101478|gb|CI693228.1|CI693228
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGT
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGT
EST: gi|88395675|gb|CI590690.1|CI590690
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88414830|gb|CI604188.1|CI604188
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAAAATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|3766856|gb|AU030966.1|AU030966
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
EST: gi|55413193|gb|CV725569.1|CV725569
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88745867|gb|CI769227.1|CI769227
EST:     TATCGCCACTGAGAAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAAC
genomic: TATCGCCACTGAGAA-GAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAAC
EST: gi|88355030|gb|CI615911.1|CI615911
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|87023870|gb|CI288223.1|CI288223
EST:     TTATCGCCACTGACAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGT
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGT
EST: gi|88426118|gb|CI604407.1|CI604407
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88320096|gb|CI639459.1|CI639459
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88340299|gb|CI652648.1|CI652648
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|88353714|gb|CI633105.1|CI633105
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
EST: gi|86901082|gb|CI306271.1|CI306271
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTA
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTA
EST: gi|88588652|gb|CI706488.1|CI706488
EST:     TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCT                         GTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG
genomic: TTATCGCCACTGAGAAGAAATTGCCTTCTATTTTAGTCGATGAAACATCTgtaagtctaa ... gcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAGTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctattcgttgtttgtttctcagaagcactaatacatagttatatgcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG
                          cactaat  putative branch site (score: 2)
                             taatacatagttatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtctaacatcactcttaatgctgaattcctcttttagtgagttgcgacatgctattcgttgtttgtttctcagaagcactaatacatagttatatgcaaattcagGTGCAAAAGATTCAGTCATTGACTCCGAACATTGGAGTTGTCTACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG