1 5' 3' | 2 5' 3' | 3 5' 3' |
...taatcagccagcaataacaattggctaatgatagcttgttactttggcgataataagttatcgtttaactctgacgatgatgttatttgtgtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTACCACCAGTACGTGCTGAGGGCCAGCGCCGCCAAGCTCGGGTCCTACCGGA
species | Oryza sativa |
transcript | LOC_Os02g41860.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAA TGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTACEST: gi|117222050|gb|CT852596.1|CT852596
genomic: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAAgtgcgtaccc ... gtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
EST: GCTTGGGAGCCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAA TGGATCTTCTGGGTGGGCCCCCTGATCGGCGC-GCCATCGCCGCCGC-TACEST: gi|58613123|gb|CK040835.1|CK040835
genomic: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAAgtgcgtaccc ... gtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
EST: GCTTGGGAGCCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAA TGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAAEST: gi|29687215|gb|CB683490.1|CB683490
genomic: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAAgtgcgtaccc ... gtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
EST: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAA TGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTACEST: gi|86547122|gb|CI187328.1|CI187328
genomic: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAAgtgcgtaccc ... gtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
EST: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAA TGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
genomic: GCTTGGGAACCGCGGTTATCTACAACAAGGACAAGGCCTGGGATGACCAAgtgcgtaccc ... gtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTAC
ggcgataataagttatcgtttaactctgacgatgatgttatttgtgtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTACCACCAGTACGTGCTGAGGGCCAGCGCCGCCAAGCTCGGGTCCTACCGGA
ctctgac putative branch site (score: 109)
tttgttc putative PPT
taataagttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatcagccagcaataacaattggctaatgatagcttgttactttggcgataataagttatcgtttaactctgacgatgatgttatttgtgtttgttcagTGGATCTTCTGGGTGGGCCCCCTGATCGGCGCCGCCATCGCCGCCGCCTACCACCAGTACGTGCTGAGGGCCAGCGCCGCCAAGCTCGGGTCCTACCGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT