1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaattcttttcttcgtagtcattcaattaagttgtatactatacatgttatttgtgtatgtactcctacttttaagtgtttatgttatctcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG
species | Oryza sativa |
transcript | LOC_Os02g40830.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|66913068|gb|CX099916.1|CX099916
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88426486|gb|CI576728.1|CI576728
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAEST: gi|58681651|gb|CK070338.1|CK070338
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88361440|gb|CI605221.1|CI605221
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|55434355|gb|CV730299.1|CV730299
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|58668786|gb|CK057472.1|CK057472
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG GAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88363539|gb|CI618100.1|CI618100
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG GEST: gi|88363539|gb|CI618100.1|CI618100
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcag-
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG GEST: gi|29662328|gb|CB658603.1|CB658603
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcag-
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|58588874|gb|CF987182.1|CF987182
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|4714828|gb|AU055945.1|AU055945
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88301023|gb|CI592203.1|CI592203
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTEST: gi|29662110|gb|CB658385.1|CB658385
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTT
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|38478366|gb|CF962499.1|CF962499
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAAGAAACTGGTCCACAGGGGAEST: gi|58684186|gb|CK072873.1|CK072873
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|58588447|gb|CF986755.1|CF986755
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|33688588|gb|CF316827.1|CF316827
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGGEST: gi|58594936|gb|CF993244.1|CF993244
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGG-
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88391665|gb|CI600854.1|CI600854
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCEST: gi|88730444|gb|CI754057.1|CI754057
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCC
EST: GGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|4880970|gb|AU065269.1|AU065269
genomic: GGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGNCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|58592643|gb|CF990951.1|CF990951
genomic: -CAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|33794775|gb|CF323267.1|CF323267
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88370572|gb|CI590150.1|CI590150
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGEST: gi|88315087|gb|CI610146.1|CI610146
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTG
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAEST: gi|27577186|gb|CA999880.1|CA999880
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAEST: gi|88356838|gb|CI619324.1|CI619324
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATT-TGGTAACAAAAGAAAGTGGTCCAEST: gi|88397989|gb|CI585492.1|CI585492
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCA
EST: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAG CAAAAATGCTTGGCCAGATTCTG
genomic: GCAGGGTGGTGTTCATATTGTTAAGGCAGAGGAAGCTGAAAGCCTCGCAGgtacgagtta ... tcctctgcagCAAAAATGCTTGGCCAGATTCTG
atgttatttgtgtatgtactcctacttttaagtgtttatgttatctcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG
ttatctcctct CT-rich tract
ttttaagtgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaattcttttcttcgtagtcattcaattaagttgtatactatacatgttatttgtgtatgtactcctacttttaagtgtttatgttatctcctctgcagCAAAAATGCTTGGCCAGATTCTGGTAACAAAACAAACTGGTCCACAGGGGAAGATTGTGAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG