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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA

Basic information

species Oryza sativa
transcript LOC_Os02g39720.6
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g39720.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G107896_T01 (Zea mays), 3'ss of exon 4
-------tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttg---ttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCAC------CAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA
        | |    | | |    ||   |   | | |  | |  | || |   ||         |  |||  |  | |||||   | || |   ||| ||||| ||||||||||| ||||||||||| | |||||| || |||||||||||||| ||||      || | | | |  |||   |||||   ||||| |                 
agtgactagataaaatatagatcaatgtctttgcctcactagcagtctttt-caatggattatgttgcgttcatcctgaaaacaaatgttggggttttcagGAGCTACAGCCCACGAGATCGTTCTCCTAGGAGGCGAAGTTACAGCAGGTCGCCGCCACTGCCACCACCGCCTCCTAGAAATAACAGCATGTCACCACGG---------------

upper sequence: LOC_Os02g39720.4 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G027105_T04 (Zea mays), 3'ss of exon 4
tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttg---ttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCC-TCGTGAGCGA
      |      | |  |       | |||  | |    || |   ||         | ||||  |  | |||||   | || |   |||  |||| |||||||| || ||||||||||| | |||||| || ||||||||||||||||    | ||| |||||| ||   |||| | ||||| || |  ||  ||    |  
--aaaatacagatcaatgtcttcttgcctaactagcagcctttt-caatgcgttattttatgttcatcctgaaaacaaatgttcggtttttccggagctacagCCCGCGAGATCGTTCTCCTAGGAGGCGAAGTTACAGCAGGTCGCCACTGGGATCTCCTGCACGGAGTCTCAGCAGGTCACCGCCGCTGCCGCCGCCTCCT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33820729|gb|CF336171.1|CF336171
EST:     AGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|29660884|gb|CB657159.1|CB657159
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33655054|gb|CF277668.1|CF277668
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88206556|gb|CI206405.1|CI206405
EST:     GAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: GAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88241382|gb|CI241231.1|CI241231
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33686629|gb|CF314868.1|CF314868
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86435370|gb|CI106603.1|CI106603
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|15850480|gb|BI798756.1|BI798756
EST:     AGTCGCA-CC-CAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|89168547|gb|CI038901.1|CI038901
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|218482191|gb|FG968621.1|FG968621
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87034991|gb|CI189615.1|CI189615
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|58686398|gb|CK075085.1|CK075085
EST:     CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|88244095|gb|CI243217.1|CI243217
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|33820136|gb|CF335883.1|CF335883
EST:     CAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: CAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|32948206|gb|BP184778.1|BP184778
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         G
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacag-
EST: gi|33692937|gb|CF321176.1|CF321176
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|88217821|gb|CI217670.1|CI217670
EST:     CAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCCCCACC
genomic: CAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86510612|gb|CI153245.1|CI153245
EST:     AGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88206414|gb|CI206263.1|CI206263
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|29658266|gb|CB654541.1|CB654541
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86510451|gb|CI153084.1|CI153084
EST:     GCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: GCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87018220|gb|CI265512.1|CI265512
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33655693|gb|CF278307.1|CF278307
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGG-AGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|109711528|gb|CI013133.1|CI013133
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|218504630|gb|FG968738.1|FG968738
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|86531202|gb|CI171408.1|CI171408
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|88220436|gb|CI219996.1|CI219996
EST:     TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|58663506|gb|CK052192.1|CK052192
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|86903241|gb|CI313604.1|CI313604
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTAT-GTAGAAG                         CCCAC-GGATCGTTCTCCAAAGAGGCGGCAGCTACAGCAGGTCTCCACCAC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGC-GCAGCTACAGCAGGTCGCCACCAC
EST: gi|29643918|gb|CB648925.1|CB648925
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|10930819|gb|AU161093.1|AU161093
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33656410|gb|CF279024.1|CF279024
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|4714908|gb|AU056025.1|AU056025
EST:     AGTCGCAGCCGCAGCCCAAGATNCCGGAGGAGCCCAAGCTATGGTAGAAN                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87033033|gb|CI187657.1|CI187657
EST:     CGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGCAGAAGGAGTTACAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCAC
genomic: CGCAGCCCAAGATACCGGAGGAGCCCAAGCTAT----G--GTAG--A-AGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCAC
EST: gi|38475200|gb|CF959333.1|CF959333
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|58661010|gb|CK049690.1|CK049690
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88212033|gb|CI211673.1|CI211673
EST:     TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: TCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88836947|gb|CI008383.1|CI008383
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88210718|gb|CI210567.1|CI210567
EST:     AGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88852217|gb|CI373985.1|CI373985
EST:     GTCGCAGCCGCAGCCCAAGATAGCCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: GTCGCAGCCGCAGCCCAAGATA-CCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86524080|gb|CI164286.1|CI164286
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|33659836|gb|CF282449.1|CF282449
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88205458|gb|CI205307.1|CI205307
EST:     CCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: CCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|38482929|gb|CF966731.1|CF966731
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|33655436|gb|CF278050.1|CF278050
EST:     AGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|325493520|gb|JG458044.1|JG458044
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCG
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCG
EST: gi|86823218|gb|CI254080.1|CI254080
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|33655845|gb|CF278459.1|CF278459
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|58684860|gb|CK073547.1|CK073547
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|88265222|gb|CI368996.1|CI368996
EST:     CCGGAGGAGCCCAAGCTAT-GTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: CCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86599832|gb|CI255994.1|CI255994
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|29687025|gb|CB683300.1|CB683300
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87031507|gb|CI263880.1|CI263880
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87024794|gb|CI261303.1|CI261303
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|88832565|gb|CI008161.1|CI008161
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86497432|gb|CI140065.1|CI140065
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|58691645|gb|CK080332.1|CK080332
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86495002|gb|CI137635.1|CI137635
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86906238|gb|CI320169.1|CI320169
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87033138|gb|CI187762.1|CI187762
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33657441|gb|CF280055.1|CF280055
EST:     GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: GCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86530292|gb|CI170498.1|CI170498
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88201589|gb|CI201944.1|CI201944
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|29658267|gb|CB654542.1|CB654542
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|88206373|gb|CI206222.1|CI206222
EST:     ATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGTTACAGCAGGTCGCCACCACC
genomic: ATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|33806964|gb|CF329363.1|CF329363
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86528595|gb|CI168801.1|CI168801
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGGAGTTACAG                 
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGT------AG--A-AGgtaatgtaaa ... gg
EST: gi|33664155|gb|CF295122.1|CF295122
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGTTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|86596340|gb|CI268640.1|CI268640
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
EST: gi|87020038|gb|CI277770.1|CI277770
EST:     AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAG                         CCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC
genomic: AGTCGCAGCCGCAGCCCAAGATACCGGAGGAGCCCAAGCTATGGTAGAAGgtaatgtaaa ... ggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA
 tgataac  putative branch site (score: 2)
             tttgtttgtttttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgttgttgtgttgccacatacatgcccttaagcaactattttctgtgataaccgcaagtttgtttgtttttaaaacctttctttgttttaggagttacagCCCACGGGATCGTTCTCCAAAGAGGCGCAGCTACAGCAGGTCGCCACCACCAGCTCGTGCACGAAGCTACAGCCGATCACCTCCACCTCCTCGTGAGCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC