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gtaagaaagatacatattagcaccaacatttaccataaaataatttaagaatttcatgtaaaaataaattgggatgttctgtatgaggaagtagtttctctgtttttaagtctgatgatatactagtgcctaaatagcattctcctgttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
species | Oryza sativa |
transcript | LOC_Os02g38840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCACAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTAEST: gi|88304205|gb|CI599893.1|CI599893
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATAC-TCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTAEST: gi|29635730|gb|CB640739.1|CB640739
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTAEST: gi|88443530|gb|CI596997.1|CI596997
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACATAEST: gi|29616736|gb|CB621748.1|CB621748
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATA
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTAEST: gi|88395088|gb|CI609404.1|CI609404
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAANGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACATAEST: gi|88403178|gb|CI570919.1|CI570919
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATA
EST: TATGCA-GATCAA-TATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACEST: gi|88445341|gb|CI587235.1|CI587235
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAAC
EST: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCA-TTAEST: gi|88345041|gb|CI625887.1|CI625887
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
EST: TATGCCAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGG ATACCTCAAAGGAGCTTCACATGAACATATTTCAC
genomic: TATGCAAGATCAAATATTTCGGATGATGGATTAAGAGAACGCATTCGTGGgtaagaaaga ... gttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCAC
gtttttaagtctgatgatatactagtgcctaaatagcattctcctgttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
gcctaaa putative branch site (score: 3)
ttctcctgtt putative PPT
atgatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaagatacatattagcaccaacatttaccataaaataatttaagaatttcatgtaaaaataaattgggatgttctgtatgaggaagtagtttctctgtttttaagtctgatgatatactagtgcctaaatagcattctcctgttatcgcagATACCTCAAAGGAGCTTCAGATGAACATATTTCACAATTTTTGCAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG