1 5' 3' | 2 5' 3' | 3 5' 3' |
...cctcttacaaatgtgttaactctcaacttgtgcatatttcatatttgtgcatatgcaaaaaacaaatacatacaatcctcatgaaatgcacaaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAATGTTGGAAACGTCAAAGTTGTGGAGCAGAAGAAAGCTAACCCCGTTGC
species | Oryza sativa |
transcript | LOC_Os02g38200.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|86497025|gb|CI139658.1|CI139658
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCCAAGGAGCTTCTGCAGGAEST: gi|29663735|gb|CB660010.1|CB660010
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAG-CAAGGAGCTTCTGCAGGA
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|2798981|gb|AA752275.1|AA752275
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|86828302|gb|CI276879.1|CI276879
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|29680357|gb|CB676632.1|CB676632
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|27577665|gb|CB000360.1|CB000360
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTACCTCGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCCAGCAAGGAGCTTCTGCAGGAAEST: gi|89183594|gb|CI046159.1|CI046159
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: CTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|27577491|gb|CB000186.1|CB000186
genomic: CTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: GGCTAACATGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAEST: gi|88956267|gb|CI092555.1|CI092555
genomic: GGCTAACACGGCTGCAGGTATTGCTGGAGGCACTGGTGTCATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
EST: CATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
genomic: CATGCCTGGAGgtaaattttg ... caaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAA
tgtgcatatgcaaaaaacaaatacatacaatcctcatgaaatgcacaaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAATGTTGGAAACGTCAAAGTTGTGGAGCAGAAGAAAGCTAACCCCGTTGC
aaaaaacaaatacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctcttacaaatgtgttaactctcaacttgtgcatatttcatatttgtgcatatgcaaaaaacaaatacatacaatcctcatgaaatgcacaaattttagGTAATGTGGGTCAGGACCATGCTGTCTTCGAGCAAGGAGCTTCTGCAGGAAATGTTGGAAACGTCAAAGTTGTGGAGCAGAAGAAAGCTAACCCCGTTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - -tgtgtta
- - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgca