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gtgagctcacttgaccctagttggagttcactttatggttacgagttgcttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCGTAGCACGCTGGAACTTCTCCGTGCTGGTGGCTCACCAGTAACCTCAGAA
species | Oryza sativa |
transcript | LOC_Os02g35870.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACA ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCGEST: gi|58601085|gb|CK011613.1|CK011613
genomic: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
EST: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACA ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCGEST: gi|29682555|gb|CB678830.1|CB678830
genomic: GAAGACAAGGACATAATGGGTGAGGTAACCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
EST: CCAAGACCCACGAACCCATACA ATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
genomic: CCAAGACCCACGAAGCCATACAgtgagctcac ... gtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCG
ttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCGTAGCACGCTGGAACTTCTCCGTGCTGGTGGCTCACCAGTAACCTCAGAA
tatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcacttgaccctagttggagttcactttatggttacgagttgcttgaatatttgtttctgaaaggattctctcctttggatttgttttgtggcgttagATTGTTGGATAAGTCCATCTCCACGCTGCAGATGGAACTTGCAGCTAAGCGTAGCACGCTGGAACTTCTCCGTGCTGGTGGCTCACCAGTAACCTCAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG