1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atctccgtgacaatactctgtttgggcctgattatgttttcttggttttgctactgtattttcactctagtcacaagagttatgcttccttccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGAT
species | Oryza sativa |
transcript | LOC_Os02g35700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAG CATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCEST: gi|56148082|gb|AU175046.2|AU175046
genomic: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGgtaaagaaca ... tccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTC
EST: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAG CATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCEST: gi|87014579|gb|CI284091.1|CI284091
genomic: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGgtaaagaaca ... tccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTC
EST: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAG CATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCEST: gi|86850720|gb|CI309532.1|CI309532
genomic: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGgtaaagaaca ... tccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTC
EST: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAG CATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGEST: gi|86533331|gb|CI173537.1|CI173537
genomic: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGgtaaagaaca ... tccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTG
EST: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAG CATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTC
genomic: TTGATTGGGCCAACTGATGCAAGAAAGGCTAAAATTTCTAATCCTAATAGgtaaagaaca ... tccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTC
ttttgctactgtattttcactctagtcacaagagttatgcttccttccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGAT
tgcttccttccatttc CT-rich tract
tgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctccgtgacaatactctgtttgggcctgattatgttttcttggttttgctactgtattttcactctagtcacaagagttatgcttccttccatttcagCATTAGAGCAATGTGTGGAGTGGACTCAGAGAAAAACTGTGTGCATGGTTCAGATTCACCACAATCTGCAGCCAGAGAAATTTCATTTTTCTTTGGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- ctccgtg
- - - - - - - - -ctgtttg
- - - - - - - - - - - - -gcctgat
- - - - - - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttcc