1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacattttttttttgttgaaacttctatgcacatgctaaataataatatcccgatggaatctgcaggcgggatttcaattttttccgcgtagaatataaagtgcatttgatgaaagaaaattttcctcatgagcatggttcatatactttatgtaattacatatatgtgttttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTG
species | Oryza sativa |
transcript | LOC_Os02g35130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAG NNNNNTNTTGAGCTATGCAAAAACAGAGTTGNTCTCTTTGATEST: gi|33684042|gb|CF312281.1|CF312281
genomic: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGgtaacatttt ... ttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGAT
EST: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAG AAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCEST: gi|29678306|gb|CB674581.1|CB674581
genomic: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGgtaacatttt ... ttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACC
EST: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAG AAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCEST: gi|29678307|gb|CB674582.1|CB674582
genomic: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGgtaacatttt ... ttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACC
EST: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAG AAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCEST: gi|33683949|gb|CF312188.1|CF312188
genomic: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGgtaacatttt ... ttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACC
EST: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAG AAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACC
genomic: GTGAAAATAAATTGAAGAGCATGCTGAATAATGCCCCAGAGTATCTGCAGgtaacatttt ... ttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACC
tcatgagcatggttcatatactttatgtaattacatatatgtgttttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTG
ttttattt CT-rich tract
atatactttatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattttttttttgttgaaacttctatgcacatgctaaataataatatcccgatggaatctgcaggcgggatttcaattttttccgcgtagaatataaagtgcatttgatgaaagaaaattttcctcatgagcatggttcatatactttatgtaattacatatatgtgttttatttacagAAAACTGTTGAGCTATGCAAAAACAGAGTTGTTCTCTTTGATAATATGACCAAGGACCGATGGCTCCAAGAGAAGCAACTTGAAAATTTGCTTGATGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA