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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attatcagacaaacaaatatcagactttatatacttcaaaatcatcaatctttattttcaatcaatgacttaccattctcttgatttttgactttaacagATCTGGAAAGCCATCAATAAGTGAATCTTGGGCTGACAAAGTTATATGGAACAAAGGTTATTTGCTAGTGAGATAAATTTATTGTGCTTATAAATGATTA

Basic information

species Oryza sativa
transcript LOC_Os02g35039.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35039.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G154532_T06 (Zea mays), 3'ss of exon 3
attatcagacaaacaaatatcagactttatatacttcaaaatca--tcaatctttattttcaatcaatga--cttaccattctcttgatttttgact-ttaacagATCTGGAAAGCCATCAATAAGTGAATCTTGGGCTGACAAAGTTATATGGAACAAAGGTTATTTGCTAGTGAGATAAATTTATTGTGCTTATAAATGATTA
| |   |   ||| |  | |     ||| | || ||  || |||  |    |||| | | || ||  ||   ||||   ||  | || | ||    | | |  ||||| |||||||||||  ||| |||| |||||||||||||||||||||||||| |||                                            
agtggtatttaaatagtttt-----tttttgtaattagaattcactttctcctttttatgcattctgtgcttcttattcttaccgtgttattcttttgtcattagATCGGGAAAGCCATCCTTAAATGAACCTTGGGCTGACAAAGTTATATGGAACCAAG--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88408080|gb|CI601558.1|CI601558
EST:     GTTTGCCAGGAGGCTTTGGACAAAGGATTTACTGTTGCTAGTCTTAATAG                         ATCTGGAAAGCCATCAATAAGTGAATATTGGG
genomic: GTTTGCAAGGAGGCTTTGGACAAAGGATTTACTGTTGCTAGTCTTAATAGgtatttctgt ... actttaacagATCTGGAAAGCCATCAATAAGTGAATCTTGGG
EST: gi|88396680|gb|CI620013.1|CI620013
EST:     TTTGCAAGGAGGCTTTGGACAAAGGATTTACTTGTTGCTAGTCTTAATAG                         ATCTGGAAAGCCATCAATAAGTGAATC
genomic: TTTGCAAGGAGGCTTTGGACAAAGGATTTACT-GTTGCTAGTCTTAATAGgtatttctgt ... actttaacagATCTGGAAAGCCATCAATAAGTGAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctttattttcaatcaatgacttaccattctcttgatttttgactttaacagATCTGGAAAGCCATCAATAAGTGAATCTTGGGCTGACAAAGTTATATGGAACAAAGGTTATTTGCTAGTGAGATAAATTTATTGTGCTTATAAATGATTA
     tttattttcaatcaat  TA-rich tract