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gtagtattcaaacctaatgtgttggatccattgctatagtgataggcaacaaaatacctactgattgtgatatagatcttaatttaattctggaaatgttgtcctttcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTCGCCATGATTACTATGCTTTAATTGCTGGCGGACAAGAAGAAATTCCAC
species | Oryza sativa |
transcript | LOC_Os02g33230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTCAAGCTCAATAAGG-ATCTAGCTTCAGGC-ATGTGTTCGTCATTCAG ATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTEST: gi|29660002|gb|CB656277.1|CB656277
genomic: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAGgtagtattca ... tcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCT
EST: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAG ATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTEST: gi|218499017|gb|FG959227.1|FG959227
genomic: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAGgtagtattca ... tcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCT
EST: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAG ATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTEST: gi|40486326|gb|BX897909.1|BX897909
genomic: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAGgtagtattca ... tcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCT
EST: ATTCAAGCTCAATAAGG-ATCTAGCTTCAGGCAATGTGTTCGTCATTCAG ATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCT
genomic: ATTCAAGCTCAATAAGGCATCTAGCTTCAGGCAATGTGTTCGTCATTCAGgtagtattca ... tcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCT
tgattgtgatatagatcttaatttaattctggaaatgttgtcctttcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTCGCCATGATTACTATGCTTTAATTGCTGGCGGACAAGAAGAAATTCCAC
ttgtcctttc CT-rich tract
tgatatagatcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtattcaaacctaatgtgttggatccattgctatagtgataggcaacaaaatacctactgattgtgatatagatcttaatttaattctggaaatgttgtcctttcgatttcagATACAGCACCCGAGGTCTCGCCTAGATAGGTTTGATCTGGTGGTGACTCCTCGCCATGATTACTATGCTTTAATTGCTGGCGGACAAGAAGAAATTCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA