1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagaatgtttgcagaaccttgaaagatacatctcctgtggtacttggtcctgctttattgactctgttgaacttgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCA
species | Oryza sativa |
transcript | LOC_Os02g32110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAG AGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGAEST: gi|218478222|gb|FG952334.1|FG952334
genomic: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGgtaagaatgt ... tgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGA
EST: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAG AGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGAEST: gi|218490368|gb|FG951159.1|FG951159
genomic: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGgtaagaatgt ... tgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGA
EST: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAG AGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGAEST: gi|218491911|gb|FG966985.1|FG966985
genomic: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGgtaagaatgt ... tgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGA
EST: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAG AGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGA
genomic: GGCCTGTTCTATGACAATGGGAATGACCCTGAGGGTGGGTATTATGCAAGgtaagaatgt ... tgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGA
catctcctgtggtacttggtcctgctttattgactctgttgaacttgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCA
tattgac putative branch site (score: 9)
tttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatgtttgcagaaccttgaaagatacatctcctgtggtacttggtcctgctttattgactctgttgaacttgttatacagAGGTGCCCGAGCTTCACTGTGGGAGAATTTCAAGAACAATCCCCTCTTCGACATTTCTACGGAACACCCAGCTACTTACTATGAAGATATGCAGCGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA