1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtggcgatgtgcaagtttcttgtttctaggtgttagattcataactgttcttatgttctcagtaaatctgctaactcatgcttttccttattcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTTTGCTGGCATCACATGGGTGATGGACACAAGGCTTTGTTGGATGCTTATG
species | Oryza sativa |
transcript | LOC_Os02g29150.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCGGTCGAGAAAAAGGATTATCTTTCTGCAACAGGATTCTACAGTCAG GCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTTEST: gi|8857531|gb|AU094849.1|AU094849
genomic: AGGCGGTCGAGAAAAAGGATTATCTTTCTGCAACAGGATTCTACAGTCAGgtacttcaga ... ttcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTT
EST: GGCGGTCGAGAAAAAGGATTATCTTTCTGNCAACAGGATTCTACAGTCAG GCAGTGGACCTTTACCCTGATGATNCAACCTTGTTNTCAAATAGAAGCCTT
genomic: GGCGGTCGAGAAAAAGGATTATCTTTCTG-CAACAGGATTCTACAGTCAGgtacttcaga ... ttcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTT
tgttcttatgttctcagtaaatctgctaactcatgcttttccttattcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTTTGCTGGCATCACATGGGTGATGGACACAAGGCTTTGTTGGATGCTTATG
tgctaac putative branch site (score: 1)
tgcttttccttattc putative PPT
ttattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggcgatgtgcaagtttcttgtttctaggtgttagattcataactgttcttatgttctcagtaaatctgctaactcatgcttttccttattcaatgtagGCAGTGGACCTTTACCCTGATGATGCAACCTTGTTCTCAAATAGAAGCCTTTGCTGGCATCACATGGGTGATGGACACAAGGCTTTGTTGGATGCTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - gtgcaag
- - - - - - - - - - tgtttct
- - - - - - - - - - - - - - - - - - - - - - -tgttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctgct