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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaaactgtgttcagacttgttattcctgtttacagattgactccgtaggttgtctttgagctgtcatatcatttgatccttcattgttgaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTGTCAGGAAGCTTGAGAAGCGCCAACAGGGACGCACACTTGACGCCCACA

Basic information

species Oryza sativa
transcript LOC_Os02g28810.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33810743|gb|CF331265.1|CF331265
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|87018755|gb|CI254463.1|CI254463
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88216913|gb|CI216515.1|CI216515
EST:     GGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCTAGAAGGATTCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: GGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|163927796|gb|EG710552.1|EG710552
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGT
EST: gi|218482141|gb|FG968611.1|FG968611
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86542963|gb|CI183169.1|CI183169
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|8335431|gb|BE040383.1|BE040383
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88840629|gb|CI080083.1|CI080083
EST:     AGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: AGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|87035083|gb|CI189707.1|CI189707
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88262207|gb|CI365783.1|CI365783
EST:     ATAATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGGATGGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGT
genomic: AT-ATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAA-GGAT-GCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGT
EST: gi|88216812|gb|CI216414.1|CI216414
EST:     GAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: GAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88240537|gb|CI239699.1|CI239699
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|87033802|gb|CI188426.1|CI188426
EST:     TGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88962721|gb|CI023821.1|CI023821
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86532662|gb|CI172868.1|CI172868
EST:     AGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: AGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86843433|gb|CI341485.1|CI341485
EST:     TCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86834175|gb|CI340686.1|CI340686
EST:     TTGGTAGAAAGAAGAAGGCTCCTCCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86822080|gb|CI357772.1|CI357772
EST:     CTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: CTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86592532|gb|CI253213.1|CI253213
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88209477|gb|CI209326.1|CI209326
EST:     TGGATACTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|163926600|gb|EG713616.1|EG713616
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAATAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|33684454|gb|CF312693.1|CF312693
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88241517|gb|CI241366.1|CI241366
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58603387|gb|CK013915.1|CK013915
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58589367|gb|CF987675.1|CF987675
EST:     TGGCTATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|33811510|gb|CF331643.1|CF331643
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58693330|gb|CK082017.1|CK082017
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|218495081|gb|FG957501.1|FG957501
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88205557|gb|CI205406.1|CI205406
EST:     AAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: AAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58682016|gb|CK070703.1|CK070703
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|55411402|gb|CV723778.1|CV723778
EST:     CAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: CAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88216601|gb|CI214701.1|CI214701
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88238855|gb|CI236706.1|CI236706
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58602538|gb|CK013066.1|CK013066
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58685670|gb|CK074357.1|CK074357
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88204901|gb|CI202752.1|CI202752
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|88974461|gb|CI022002.1|CI022002
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|218491441|gb|FG947040.1|FG947040
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|7332465|gb|AU085811.1|AU085811
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|218498995|gb|FG968232.1|FG968232
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|33655298|gb|CF277912.1|CF277912
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86528688|gb|CI168894.1|CI168894
EST:     GGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: GGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|218495362|gb|FG969367.1|FG969367
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|58689688|gb|CK078375.1|CK078375
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
EST: gi|86523086|gb|CI163292.1|CI163292
EST:     TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAG                         GGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT
genomic: TGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 30

GCAAGTTGATGCTGCCCCCTTCAAGCAGTGGTACCTCACTCACTATGGAGTGGATATTGGTAGAAAGAAGAAGGCTCCTGCAGCCAAGAAGGATGCTGAGgtatttttct ... gaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTGTCAGGAAGCTTGAGAAGCGCCAACAGGGACGCACACTTGACGCCCACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtaggttgtctttgagctgtcatatcatttgatccttcattgttgaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTGTCAGGAAGCTTGAGAAGCGCCAACAGGGACGCACACTTGACGCCCACA
                           atttgat  putative branch site (score: 30)
                      atatcattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcaaactgtgttcagacttgttattcctgtttacagattgactccgtaggttgtctttgagctgtcatatcatttgatccttcattgttgaatttacagGGGCAGGATGCTGAAGCTACCACAGAGGAAGCGAAGAAAAGCAACCATGTTGTCAGGAAGCTTGAGAAGCGCCAACAGGGACGCACACTTGACGCCCACA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
atcaaac
- - - - - - - - - - - -attcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgtca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatttg