1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggcagtagcaggtgataaaatgaacttatctgaggtccctgagcaaagtcatgatgtccttacacggctggagtaagaggaaatgcaagaatgtgggcagAGAAATTGAGAAATGTCGAAAGGAGCTAGCTGCCCTACTGGAATCAAACTCGGATAGTTTAGCGATTCGGGGAGCCACGGATAGGCTAAATGAACTTCTA
species | Oryza sativa |
transcript | LOC_Os02g25290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aagtcatgatgtccttacacggctggagtaagaggaaatgcaagaatgtgggcagAGAAATTGAGAAATGTCGAAAGGAGCTAGCTGCCCTACTGGAATCAAACTCGGATAGTTTAGCGATTCGGGGAGCCACGGATAGGCTAAATGAACTTCTA
tccttac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcagtagcaggtgataaaatgaacttatctgaggtccctgagcaaagtcatgatgtccttacacggctggagtaagaggaaatgcaagaatgtgggcagAGAAATTGAGAAATGTCGAAAGGAGCTAGCTGCCCTACTGGAATCAAACTCGGATAGTTTAGCGATTCGGGGAGCCACGGATAGGCTAAATGAACTTCTA
- cagtagc
- - - - - - - - aaaatgaa
- - - - - - - - - - - - - - - - - gtccctg
- - - - - - - - - - - - - - - - - - - - -agcaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcaag