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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA

Basic information

species Oryza sativa
transcript LOC_Os02g21970.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G038126_T01 (Zea mays), 3'ss of exon 3
agggatttacacagatattgtcgag-----aatattttatgaaattcctatgcttga-aggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
     | || |   | | | | |       || | |||   | |||    | | |   || |     | ||||| |  |    | || ||   || |    | ||||||||||| ||||||||||||||||||||||||||||||||||| || ||  |||| || || ||||| ||||||||||| ||||| |||||| | ||||
---tctctaaaagcaaacttttggagttccaacagttttctagattatagttcctactagctctttttgtttcttattagtaatgttgtt---atctatgttacagATGGATGGGTTTGATCAAACAGTGAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACA

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G090904_T01 (Zea mays), 3'ss of exon 3
agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaa-------atgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
      |   | || ||   | | |||| |  ||| |  |||||| | ||  |  |   | || || |    || | || ||   ||       || |    ||||||||||||| |||||||||||||| |||||||||||||||||||| || ||  |||| || || ||||| |||||| |||| ||||| |||||| | ||||
----tctctaaaagctaactttgggaat-tcctat-agtttccta-gattataattcctactagttttttttatttcttattagtaatgtggttatttatgttgcagATGGATGGGTTTGATCAAACAGTCAATGTGAAGGTTATAATGGCAACTAATCGGGCAGACACTCTAGATCCTGCTTTGTTGCGTCCTGGTAGACTTGACA

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA18G05730.1 (Glycine max), 3'ss of exon 3
--------------------------------------agggatttacacagatattg----tcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgttttttta----aaatgtcgaat-------gcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                         | |||   |   ||||     |    ||||| |   ||   | |  ||  | |   || |  ||| ||| |   | || || |||     || |  |   |        ||||||||||| ||||| ||||| || ||||| || ||||||||||| || ||||| || || ||| | |||||||||||||| ||||| || ||  | ||  
ggtgtctatgaaatgatatttctgttagcttctgtgattatgttttgtgctactattagtacttactaatatctcccgag-ctgcagtgaatcagttttcacttatctcttaatctctggttatttggtttaattacctgttcttttctacaGATGGATGGTTTTGACCAAACGGTAAATGTTAAAGTTATAATGGCAACTAACAGAGCAGACACCTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGAT-

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA11G31450.1 (Glycine max), 3'ss of exon 3
----------------------------------------------------------------------------------------agggatttacacagatattgtcgagaa--tattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaa------aatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                                                                          |  |||    |  | ||  |    |  |||||  |   | | |  | ||  | | ||  ||   |||||   | |||||  |||||        | |    | ||||||||||| ||||| |||||||| ||||| || ||||| ||||| || ||||| || || ||  | |||||||||||||| ||||| || ||  | ||  
gtatctatgaaatgatatttctattaggtgctgtgagtatgttgttactactattagtagttactaatttctgctggctgctgtgtattagtttttgtttatctcttaccctctagctatttggttggactacacttctctatgattttagatattctc-tgaagtgttggtttaattacctgttcttttcttcagATGGATGGTTTTGACCAAACAGTTAATGTTAAAGTTATTATGGCAACTAACAGAGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA11G31470.1 (Glycine max), 3'ss of exon 3
------------------------------------------------------------------------------------------agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgt--gtttttttaa--aatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                                                                          ||   ||    |   ||   || ||    ||   ||   | |   | | |     || |  |||||       |||  ||||  |||     | |    | ||||||||||| ||||| |||||||| ||||| || ||||| ||||| || ||||| || || ||  | |||||||||||||| ||||| || ||  | ||  
gtatctatgaaatgatatttatgttaggtgctgtgagtaggttgttactactattagtagttactaatttctgatgggctgctgtgaattagtttttgtttctcttaacctctagctatttggttgggctacacttccctatgattttagatattttctgaagtgttggtttaattacctgttcttttcttcagATGGATGGTTTTGACCAAACAGTTAATGTTAAAGTTATTATGGCAACTAACAGAGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 3'ss of exon 3
agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttt-tttaaaatgtcgaat-----gcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
     |    ||| ||| ||      |  | | ||  |  || |||| ||| ||  | | | |||| |     |||  ||   |||   ||| ||||     | |||||||||||||||| || || |||||||| ||||| |||||||| || |||||||| || || ||||| |||||||| |||||||| || ||| | ||  
----gtgagaacaaataatgaattttagttgtaattcagatcttatg-ttgtagaataatggattt-tagttgtgtccttaacttattgtgttgaattcgatgtagATGGATGGATTTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACAGGGCAGACACTCTAGATCCTGCTCTCTTACGTCCTGGAAGACTTGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S79_171V6.1 (Physcomitrella patens), 3'ss of exon 3
agggatttacacag----atattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
     ||| | ||     || || ||        | | |    ||  | |  |||     |   || | | |    |  | ||| |||    | | |  ||||||||||||| || ||||||||||| ||||| ||||| || ||||| |||||  | |||||||| || ||||| ||| |  | || || ||  || | ||  
--aattttgctcatttttatcttttccttctctctctctctcgtttttgt-tttgttttgttttgtttatttacttaactctttatttttgctat-gggtgcagATGGATGGTTTCGATCAAACAGTTAATGTAAAGGTAATTATGGCCACCAATCGAGCGGATACTCTTGACCCCGCTTTACTGCGACCTGGACGACTCGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S243_67V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------------------------------agggatttacacagatattgtcgagaatattttatgaaattcctatgc---ttgaaggttgaagtatttct-caccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                                                   |||   |    ||  ||||   |   | |  |    |   | |  | |   ||    || ||||| |  || |      |   |||||||  |   |  | ||||||||||| |||||||||||||| ||||| || || || ||||| |||||| |||| ||||| |||||||| ||| |||| || || ||  |  | ||  
gtatgaagtctttttaatttctcagttttttgtctgaagagtccattcctcaaatggtggacctcctaggtgatagatcatttatttctgtacagaactcggtagtcttcagttcatttttctcgtcgaagtttggctgcttttcttacatttttaatgttctggttacagATGGATGGTTTTGATCAAACAGTCAATGTTAAAGTGATCATGGCTACCAACCGGGCAGATACTCTAGACCCCGCTTTGTTGCGACCTGGACGTCTTGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S36_183V6.1 (Physcomitrella patens), 3'ss of exon 3
-agggatttacacagatattg--tcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcg--aatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
 |    |||          ||  |  ||   | |      ||  | || | | | |  | |   | ||    | ||     | |   ||  ||| |    | ||||||||||| || || ||||| |||||||||||||| || ||||| |||||  | || ||||| || || || || ||| |||| || ||  |  | ||  
gaacatttttggtgctcgctgctttaaggccaataagccgaaa-cataggttggcacttcgtcattttctaaatcaa----tctcacaatttgttgctgtttcagATGGATGGTTTCGACCAAACTGTGAATGTGAAGGTGATCATGGCCACCAATCGTGCTGATACTCTTGATCCAGCGCTGCTACGACCTGGACGTCTTGATC

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ38338 (Selaginella moellendorffii), 3'ss of exon 3
agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                              |    | |     ||||       ||       |  ||    |        ||||||||||| || |||||||| ||||||||||||||||| ||||| || ||| | ||||| ||  | || || || || || ||||| || ||| | ||||
----------------------------------------------gtaaaaggaaccgagtagagtaagccgctgacgtccttgtgcttct-----cagATGGATGGTTTCGATCAAACCGTGAATGTGAAGGTTATCATGGCTACAAACCGTGCGGACACTTTGGATCCCGCGCTCTTGCGTCCGGGAAGACTTGACA

upper sequence: LOC_Os02g21970.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ04233 (Selaginella moellendorffii), 3'ss of exon 3
agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                                              |    | |    |||||       ||       |  ||    |        ||||||||||| || |||||||| ||||||||||||||||| ||||| || ||| | ||||| ||  | || || || || || ||||| || ||| | ||||
----------------------------------------------gtaaaaggaaccaagtagagtaagccgctgacgtccttgtgcttct-----cagATGGATGGTTTCGATCAAACCGTGAATGTGAAGGTTATCATGGCTACAAACCGTGCGGACACTTTGGATCCCGCGCTCTTGCGTCCGGGAAGACTTGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678900|gb|CK067587.1|CK067587
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ACGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29656423|gb|CB652698.1|CB652698
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|11564715|gb|AU165351.1|AU165351
EST:     GTNCTGACCCGAGAAGTTCAGCGTATTTCTTATGGAACTACTCAAATCAG                         ATGGATGGATTTGATCAAAACAGTGAATGTGAAGNTTATAATGGCGACCC
genomic: GTGCTGA-CCGAGAAGTTCAGCGTA-TTCTTATGGAACTACTC-AATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATC-AAACAGTGAATGTGAAGGTTATAATGGCGA-CC
EST: gi|86501980|gb|CI144613.1|CI144613
EST:     CCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|88221302|gb|CI221258.1|CI221258
EST:     TACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: TACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29624229|gb|CB629240.1|CB629240
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29656424|gb|CB652699.1|CB652699
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29683628|gb|CB679903.1|CB679903
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|25798027|gb|CA753988.1|CA753988
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29636555|gb|CB641564.1|CB641564
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29624298|gb|CB629309.1|CB629309
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29624228|gb|CB629239.1|CB629239
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|86601860|gb|CI258536.1|CI258536
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|86495973|gb|CI138606.1|CI138606
EST:     TGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: TGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29628786|gb|CB633797.1|CB633797
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|86503152|gb|CI145785.1|CI145785
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
EST: gi|29624299|gb|CB629310.1|CB629310
EST:     CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAG                         ATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC
genomic: CTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 67 (downstream exon)
Score: 125

ATTCATCGATGAGGTTGATGCTATAGCAACTGCTCGTTTTGATGCTCAGACTGGTGCTGACCGAGAAGTTCAGCGTATTCTTATGGAACTACTCAATCAGgtaaggttta ... tcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA
                   ttctcac  putative branch site (score: 125)
                           atgtgtttttttaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agggatttacacagatattgtcgagaatattttatgaaattcctatgcttgaaggttgaagtatttctcaccatgtgtttttttaaaatgtcgaatgcagATGGATGGATTTGATCAAACAGTGAATGTGAAGGTTATAATGGCGACCAACAGGGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACA

- - - - acacaga
- - - - - - - - - - - - - - - - - - - - - - atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttt