Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgcttccctcactccctcaccttgtgttggacgatgcatcatgtctcgcaatttcgaagcaaaacaaaaaggagaagaaatttgaacgaattttgctaactttgtccatggctgtggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGCTACCACTGATCGGACGGACGGACACGATCTATCGCCATTAAGGGATCAA

Basic information

species Oryza sativa
transcript LOC_Os02g21300.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88245804|gb|CI245653.1|CI245653
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88250878|gb|CI248729.1|CI248729
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88244742|gb|CI243864.1|CI243864
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|89186321|gb|CI262153.1|CI262153
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88244566|gb|CI243688.1|CI243688
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88250897|gb|CI248748.1|CI248748
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248321|gb|CI248170.1|CI248170
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88971621|gb|CI388866.1|CI388866
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGCCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88243554|gb|CI243951.1|CI243951
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88247985|gb|CI247834.1|CI247834
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|86593498|gb|CI264377.1|CI264377
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248540|gb|CI248389.1|CI248389
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248320|gb|CI248169.1|CI248169
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCCCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88248811|gb|CI247895.1|CI247895
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCAATACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|87025611|gb|CI250031.1|CI250031
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88284260|gb|CI405706.1|CI405706
EST:     CGTCCGCGCCGACGAGGCCCACCACCGCGA-GTTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: CGTCCGCGCCGACGAGGCCCACCACCGCGACG-TCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88249245|gb|CI249094.1|CI249094
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
EST: gi|88243144|gb|CI244266.1|CI244266
EST:     TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCC                         GACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC
genomic: TCGTCCGCGCCGACGAGGCCCACCACCGCGACGTCAACCACTACGCCTCCgtacgcttcc ... ggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagaagaaatttgaacgaattttgctaactttgtccatggctgtggatgtgcagGACATACATTACCAGGGTCACGCGCTGAGGGAGGTGGCCGCGCCGCTCGGCTACCACTGATCGGACGGACGGACACGATCTATCGCCATTAAGGGATCAA
                       tgctaac  putative branch site (score: 1)
       aaatttgaa  TA-rich tract