1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtacaatcattttgctatttttaatttggatcaaatggtacacatttgcattcttctgagttctgcatgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACGGCAGGATGTTAAAA
species | Oryza sativa |
transcript | LOC_Os02g20930.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG AGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACEST: gi|13806121|gb|AU181366.1|AU181366
genomic: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTGgtacaatcat ... tgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
EST: CCTTGCAAGTG AGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACEST: gi|29615477|gb|CB620489.1|CB620489
genomic: CCTTGCAAGTGgtacaatcat ... tgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
EST: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG AGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACEST: gi|29662176|gb|CB658451.1|CB658451
genomic: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTGgtacaatcat ... tgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
EST: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG AGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACEST: gi|29635298|gb|CB640307.1|CB640307
genomic: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTGgtacaatcat ... tgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
EST: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTG AGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
genomic: AGAATTTGTCTCAAAAATTGCCGATATCCTTGGACAACTCCTTGCAAGTGgtacaatcat ... tgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATAC
aatttggatcaaatggtacacatttgcattcttctgagttctgcatgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACGGCAGGATGTTAAAA
ttttaat putative branch site (score: 33)
atgtatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatcattttgctatttttaatttggatcaaatggtacacatttgcattcttctgagttctgcatgtattttagAGGAAAATGTGGAGCGTGATGCTGTTCATAAAGCACTGATGTCGCTTATACGGCAGGATGTTAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG