1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tctcaactagtaattaactgaaaagtagttggttactggtcatagaccacatttcctattgtttattttgttttaaagtcacatgcaattctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTGTTGTTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTA
species | Oryza sativa |
transcript | LOC_Os02g19510.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGTCATAACAAAAACAATTCCGNTTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|88360895|gb|CI625201.1|CI625201
genomic: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: TAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|428279|gb|D24427.1|D24427
genomic: TAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|428340|gb|D24488.1|D24488
genomic: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTNCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|58686132|gb|CK074819.1|CK074819
genomic: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|87006680|gb|CI285714.1|CI285714
genomic: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: CATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTEST: gi|33675555|gb|CF303794.1|CF303794
genomic: CATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
EST: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAG ATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
genomic: ATCGTCATAACAAAAACAATTCCGATTCAACCTCTGAAGAAGTTCCTAAGgtacgttcac ... ctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATT
accacatttcctattgtttattttgttttaaagtcacatgcaattctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTGTTGTTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTA
ttctttctgc CT-rich tract
atttcctattgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcaactagtaattaactgaaaagtagttggttactggtcatagaccacatttcctattgtttattttgttttaaagtcacatgcaattctttctgcagATTTATGTTCCCACAAACCCTAAAGGTGCTGAAAGGCTCCCACCAGGCATTGTTGTTTCTGAAACAGATCTTTTTCCACGGAGATTGTGGGGTGATCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT