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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC

Basic information

species Oryza sativa
transcript LOC_Os02g19510.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G006507_T02 (Zea mays), 3'ss of exon 3
gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
||  | | |  |  |||| ||| ||||||||  |  |||| |  ||  |||||  ||         |    |||    | ||    || ||||||||||||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||| ||||||||||||||   ||
gtagattcgcacacttgcctctattgtttttctttctcatatgcttgctttagagaaggggga---aaacactaatcgaatgtggctcacagCTTCACTTCCCTTCGAGTATCATATCCTATATTGAAGACAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC

upper sequence: LOC_Os02g19510.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G119725_T02 (Zea mays), 3'ss of exon 3
gtgaagtagatcgtttgcttctcttgttttttctcatcatgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
|| || |    |  |||| ||||||||||||     |||| || ||  |||||  ||         |    ||||  || ||    | |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||   ||
gtaaattgacacacttgcctctcttgtttttgtgtctcatatacttgctttagagaaggggga---aaacactactctaatgtggcttgcagCTTCACTTCCCTTCGAGTATCATCTCTTATATCGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTGAACCATGCTTGGGCATCTGCAAACAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29641723|gb|CB646730.1|CB646730
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58659150|gb|CK047830.1|CK047830
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|29676038|gb|CB672313.1|CB672313
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58687148|gb|CK075835.1|CK075835
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58670226|gb|CK058912.1|CK058912
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58666569|gb|CK055255.1|CK055255
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58691339|gb|CK080026.1|CK080026
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|29640936|gb|CB645943.1|CB645943
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|29624841|gb|CB629852.1|CB629852
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|58601351|gb|CK011879.1|CK011879
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|66913022|gb|CX099870.1|CX099870
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGC
EST: gi|88356602|gb|CI626217.1|CI626217
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTATCTCCTATATAG
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAG
EST: gi|88396973|gb|CI578122.1|CI578122
EST:     TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTAAAGTAAATATAACCAAG                         CTTCACTTCCCTTCCAGTATTA
genomic: TGTTGGGATACTTGTTTGGGGTTTCCTTCCCTACAGTAAATATAACCAAGgtgaagtaga ... catttcgcagCTTCACTTCCCTTCCAGTATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtattttgtttaggaaaataatctttactttctacattactgcatttcgcagCTTCACTTCCCTTCCAGTATTATCTCCTATATAGAAGATAGGAACTCTGGCATCACAACCCAGACATTGTTAAATCATGCGTGGGCATCTGCAAATCGTC
                 aaaataatctttactt  TA-rich tract