1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aaattagtatatcgtgctgtattgctagacaccagaatgtgccccctttatgctaaatatcatattgccgccatattttgtttacaatctttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATTATAACTTTGATCATCCAG
species | Oryza sativa |
transcript | LOC_Os02g17320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAG GAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATEST: gi|286561|gb|D15368.1|D15368
genomic: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAGgtttgtccct ... ttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGAT
EST: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAG GAGTCTTTTTATTATGGGTTGNCTGATGAGGAATTGGEST: gi|29643325|gb|CB648332.1|CB648332
genomic: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAGgtttgtccct ... ttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGG
EST: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAG GAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATEST: gi|44678675|gb|CR292109.1|CR292109
genomic: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAGgtttgtccct ... ttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGAT
EST: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTAGTTGCTCAG GAGTCTTTTTATAATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATEST: gi|58591679|gb|CF989987.1|CF989987
genomic: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAGgtttgtccct ... ttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGAT
EST: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAG GAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGAT
genomic: AAATGATAATCGATCAGCTACGTGATCAGCGTGTAGTTGTTGTTACTCAGgtttgtccct ... ttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGAT
ctttatgctaaatatcatattgccgccatattttgtttacaatctttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATTATAACTTTGATCATCCAG
tgctaaa putative branch site (score: 23)
tctttctttgc putative PPT
atattttgtttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattagtatatcgtgctgtattgctagacaccagaatgtgccccctttatgctaaatatcatattgccgccatattttgtttacaatctttctttgcagGAGTCTTTTTATTATGGGTTGTCTGATGAGGAATTGGTCCATGTTCATGATTATAACTTTGATCATCCAG
- - - - - - cgtgctg
- - - - - - - - - -tattgct
- - - - - - - - - - - - - - -caccaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccgcc