1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgcattcacttattggttagtgtgagcgtttgtccttcatatcactgtaagtcaaaaatgataactgctattgtttgaactttgaaatgtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTC
species | Oryza sativa |
transcript | LOC_Os02g17280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATATCTAAACCGCGCCTCTGTTTGACAGACAAGATGCTAATATCGTTGG CTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCEST: gi|89187835|gb|CI009819.1|CI009819
genomic: AATATCTAAACCGCGCCTCTGTTTGACAGACAAGATGCTAATATCGTTGGgtaagttctt ... gtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCC
EST: GACAAGATGCTAATATCGTTGG CTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCEST: gi|396941389|gb|HO188598.1|HO188598
genomic: GACAAGATGCTAATATCGTTGGgtaagttctt ... gtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCC
EST: AATATCTAAACCGCGCCTCTGTTTGACAGACAAGATGCTAATATCGTTGG CTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCC
genomic: AATATCTAAACCGCGCCTCTGTTTGACAGACAAGATGCTAATATCGTTGGgtaagttctt ... gtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCC
actgtaagtcaaaaatgataactgctattgtttgaactttgaaatgtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTC
tgataac putative branch site (score: 11)
tgtcttt putative PPT
aaaaatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcattcacttattggttagtgtgagcgtttgtccttcatatcactgtaagtcaaaaatgataactgctattgtttgaactttgaaatgtctttgcagCTGGTGGTTTAGGCCATGGAGTGGCTCATGCCGTCTTTTTCTGCCTCAGCCTTTTAACTCCAGCATTCGGCAGAGCTACATTTTATGTTGAAAAGTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- tgcattc
- - - - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga