1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagttcattcttgctgttttcatcttaaacccttgtatttatgtgcagcaatcattggccttgcgcccttgccttttgatatcaactatatctctatagcttgctctcctttatgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTAC
species | Oryza sativa |
transcript | LOC_Os02g15970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAEST: gi|426017|gb|D22705.1|D22705
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAEST: gi|33687072|gb|CF315311.1|CF315311
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAEST: gi|86499914|gb|CI142547.1|CI142547
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAEST: gi|30227453|gb|CB965345.1|CB965345
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
EST: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAA GAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
genomic: CAATGACTTGGGAGTCAACGTGGCACTATCCATGCTAAAATTTTACAAAAgtgagttcat ... atgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCA
cttgccttttgatatcaactatatctctatagcttgctctcctttatgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTAC
ttttgat putative branch site (score: 4)
cttgctctcctttat putative PPT
ttttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcattcttgctgttttcatcttaaacccttgtatttatgtgcagcaatcattggccttgcgcccttgccttttgatatcaactatatctctatagcttgctctcctttatgtgaacagGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAGTGAGTACTCTATGCAAGCATACAAAAAATACGGTGTTGCAAAGGGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG