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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggtagaacaaacattcaagtgttatgtggttgacttgatgtatcattcctaaggatctcttttgtttaagttgtaacagtatttatttttgttatcagGTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACGGCAAAAAATATATTAATGGTTATAGTTATTTGTCAATATGTACCTCGGT

Basic information

species Oryza sativa
transcript LOC_Os02g15580.3
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcctaaggatctcttttgtttaagttgtaacagtatttatttttgttatcagGTGCTCGTATTGGTAGTTCTACCCCGTCTGCAAGGCTCCTCAGTTATGACGGCAAAAAATATATTAATGGTTATAGTTATTTGTCAATATGTACCTCGGT
                           ttgtaac  putative branch site (score: 2)
                                      tttattttt  putative PPT
                              taacagtatttatttt  TA-rich tract