1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagattatatattttatcttgttatgatctgtttatcattttcataattttgctccagaacttaccttcagttgctcctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAATCTTGCGGAGATCGATCCCCTGGCATCTCTTCCAAAGCTTCAGTTTCT
species | Oryza sativa |
transcript | LOC_Os02g13990.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|218492413|gb|FG947005.1|FG947005
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|86904173|gb|CI306591.1|CI306591
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAEST: gi|29660695|gb|CB656970.1|CB656970
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|27553936|gb|CA997836.1|CA997836
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|58602112|gb|CK012640.1|CK012640
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|29663404|gb|CB659679.1|CB659679
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAEST: gi|58662231|gb|CK050911.1|CK050911
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
EST: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTG AGTTCTTGCCAAAGTTACATACATAGGTGCTTACAAACAATCGTCTTACAA
genomic: TCTGTTAGTTAACAATAACAGAATCACACGTATCAATCCCAATCTTGGTGgtaagattat ... ctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAA
ttatcattttcataattttgctccagaacttaccttcagttgctcctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAATCTTGCGGAGATCGATCCCCTGGCATCTCTTCCAAAGCTTCAGTTTCT
aacttac putative branch site (score: 30)
ttgctcctgtttct putative PPT
attttcataatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattatatattttatcttgttatgatctgtttatcattttcataattttgctccagaacttaccttcagttgctcctgtttctagAGTTCTTGCCAAAGTTACATACATTGGTGCTTACAAACAATCGTCTTACAAATCTTGCGGAGATCGATCCCCTGGCATCTCTTCCAAAGCTTCAGTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC