1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
species | Oryza sativa |
transcript | LOC_Os02g13970.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGEST: gi|88389138|gb|CI597936.1|CI597936
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTACACTTGEST: gi|29623795|gb|CB628806.1|CB628806
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTGEST: gi|58696226|gb|CK084913.1|CK084913
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
EST: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTG GCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
genomic: GAAGAGTGGTTGATATCCTGCGGAATAAGGGAATACCCGTTCGAGTATTGgtacaatact ... ttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
ttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
atctaac putative branch site (score: 2)
atttcaaatttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaatacttgtcaagcttatctacttttggcttctctgttttcattcattattacatggatagtccaacttctccctcttttgttggatctttgctgctcttaatgttgatctaacatttcaaatttcaattcagGCTAGAAATGAAGAGAAGGCGAGGAGCATGCTGGGGCCCGATGTAGACTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG