1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgacatcttcttttctagtgtcctttatgtgcaaattcttttatcatcacactagcacatcataacaaaatcagataatttccgacttacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTGTTAAAACTTTCAGTGGAAAGGCACATTTGTCAGTCGGTGCTGGTGTAA
species | Oryza sativa |
transcript | LOC_Os02g13890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTEST: gi|218495088|gb|FG956498.1|FG956498
genomic: CAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAGgtgacatctt ... tacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCT
EST: GGTCACCCCCTTCAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTEST: gi|29634317|gb|CB639326.1|CB639326
genomic: GGTCACCCCCTTCAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAGgtgacatctt ... tacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCT
EST: CGCCACTTGTGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTEST: gi|29625072|gb|CB630083.1|CB630083
genomic: CGCCACTTGTGGTATTGGATATGGAGCTCAGgtgacatctt ... tacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCT
EST: GGTCACCCCTTTCAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAG GCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCT
genomic: GGTCACCCCCTTCAGCAATCGCCACTTGTGGTATTGGATATGGAGCTCAGgtgacatctt ... tacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCT
atcatcacactagcacatcataacaaaatcagataatttccgacttacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTGTTAAAACTTTCAGTGGAAAGGCACATTTGTCAGTCGGTGCTGGTGTAA
gacttac putative branch site (score: 3)
cttaccc CT-rich tract
aaaatcagataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacatcttcttttctagtgtcctttatgtgcaaattcttttatcatcacactagcacatcataacaaaatcagataatttccgacttacccatcagGCTGGAGGTGAGCTAGCTGATTTCATTATTGTGCTGAGGAACACAGAAGCTGTTAAAACTTTCAGTGGAAAGGCACATTTGTCAGTCGGTGCTGGTGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA