1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatttgcagtttaaattaccttgttctcggttttgtcgatatataggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
species | Oryza sativa |
transcript | LOC_Os02g12480.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCCAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGAEST: gi|50878532|gb|AF527693.1|AF527693
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGAEST: gi|88269390|gb|CI380688.1|CI380688
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGCAAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAAEST: gi|16579228|gb|BI813323.1|BI813323
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAA-TACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCA-
EST: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATG GGATAGGC-AAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
genomic: ATGGGAGGAATTGCACACATGAACTGTCTTGCCAGAGTGGAGATGCTATGgtaatgatat ... aattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGA
ggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
aattaac putative branch site (score: 2)
tctaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgcagtttaaattaccttgttctcggttttgtcgatatataggtcatctctcctgtggcagtctaattaaccctggtttgttgttcaattgtgcagGGATAGGCAAAATACTTGATAGGGCTTTCTGGCTGTTTGGCATTTGTCAGACGCCCTGTGTGTGGTAACATCTCGATCAAATTGGAGGTCGAAATTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG